| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3781 |
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| Symbol | |
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| ID | 5210763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4730423 |
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| End bp | 4731895 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640597377 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001278085 |
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| Protein GI | 148657880 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00415273 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGGCA CGGCGGTGTT GCAACTGGAC GAAGTGCTGC GTGGCGTGCA GGCGGAAGCG
GATCGGCGCA AGCCGTCGCT GCCGCCCGCA CTGATGCAGG TCGCCTTCAG CGAAGCGGTG
ATCGATTCGC GGCAGGCGAC GTCGGAGTGC CTGTTCGTCG CCCTGCGCGG CGAGCGGGTC
GATGGCCACG AGTTTCTGGC GGACGCGGCA GCGCGTGGTG CACGCGGCGC CCTGGTGCGC
CGCGACAAAC TGTCGAACCT GTCGCTCGAA CGTCCTTATG CGGTGATCGA TCCGGTCACC
GGAGAAGGAC TCGAACAGGC GACACCCGAT AGTGTGCTGC TGATCGCTGT CGATGATCCG
CAGGCGGCGC TGAACCGACT GGCAGCCTAT CACCGGGGGA AGTATCACCC CGTCGTGATC
GGCGTCACCG GAAGCGTGGG TAAAACCTCG ACGAAAGAGG TGACTGCCAG CGTGCTCCAG
CGCAGCTTTC GCACCTTAAA AAGTCCAAGA AGTTACAACA GCGAGGCGTC ATTGCCCATC
GTGCTGCTCA AACTGACCGC CGACCATCAG GTGGCAGTGC TGGAAATGGG CATGTACGGT
CCGGGTGAGA TCGCGCATCT GGCGGCTCTT GCCCGGCCAC GCCTCGGAAT CGTGACCAAT
GTCGGACCTT CGCACCTTGA GCGGATGGGG AGCATCGAAG CGATCCAACG CGCCAAAAGC
GAGTTGCCGC AGGCGCTGCC CGACGATGGG TTTGCAATCC TCAACATCGA TGACCTGCGG
GTGCGCGCAA TGGCGGAGGT GACGCGCGCC CGCCCATTCT TCTATGGTCT CGACCCGGCA
GCGGATCTCT GGGCGGATTC GATCGAAAGT CGTGGGTTGC AGGGGATCAG TTTTCGGGTG
CATTATCAGG GTGACGCTTT CTATCTGACG CTCCCGTTGC TGGGACGGCA CAGCGTTCAT
ACGGCGCTCG CTGCGGCGTC CGCCGGGTTG CTGCTCGGCA TGGAGTGGGA AGCGATTATT
GCCGGGCTGC GCGACGAAAG CGCCCAACTC AGGCTTCTGG CTGTGCCCGG CGTCAATCAG
ACAACGCTGA TCGACGATAC ATACAATGCA TCGCCAGCCT CGATGCTGGC GGCGCTCAAC
CTGCTGGCGG AACTCGAAGG GCGGCGCATC GCCATTCTGG GCGATATGCT CGAATTGGGA
AGCGTCGAAG AAGAGGCACA CCGCAGGGTT GGAGCGCGTG TTGCCGAAGT TGCCCGGTTT
CTGATCACGG TTGGACGGCG GGCGCGCTGG ATCGCCGATG AGGCGCTTCA GGCAGGTATG
GCGCCCGACC AGGTGTGGAG CGTGGACGAT AACGATGAAG CGGCAGACCT GGCGATGTCC
TGCCTGGCGC CCGGCGATAT CGTGTTGATC AAGGGGTCGC GCGGTATGCT GATGGAGAGT
ATTGTGGCGC GATTGCAGCA GCGTCGTCCG TGA
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| Protein sequence | MKGTAVLQLD EVLRGVQAEA DRRKPSLPPA LMQVAFSEAV IDSRQATSEC LFVALRGERV
DGHEFLADAA ARGARGALVR RDKLSNLSLE RPYAVIDPVT GEGLEQATPD SVLLIAVDDP
QAALNRLAAY HRGKYHPVVI GVTGSVGKTS TKEVTASVLQ RSFRTLKSPR SYNSEASLPI
VLLKLTADHQ VAVLEMGMYG PGEIAHLAAL ARPRLGIVTN VGPSHLERMG SIEAIQRAKS
ELPQALPDDG FAILNIDDLR VRAMAEVTRA RPFFYGLDPA ADLWADSIES RGLQGISFRV
HYQGDAFYLT LPLLGRHSVH TALAAASAGL LLGMEWEAII AGLRDESAQL RLLAVPGVNQ
TTLIDDTYNA SPASMLAALN LLAELEGRRI AILGDMLELG SVEEEAHRRV GARVAEVARF
LITVGRRARW IADEALQAGM APDQVWSVDD NDEAADLAMS CLAPGDIVLI KGSRGMLMES
IVARLQQRRP
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