| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3739 |
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| Symbol | |
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| ID | 5210721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4676753 |
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| End bp | 4679143 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640597335 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001278043 |
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| Protein GI | 148657838 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.84423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00115944 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGATG AGACGCCCCT CAGAGTGCTG TTGATTGCCC AGAATGATGA TGTTGCAGGC
AGGATACGGT CAGTGTTCGG TGATCTTGCG ATCACGCTCG AACACGTCTC TCCCGAACAG
GCGTTGCAAA CATTGCTCGT CTCCCGCACC GATGCAACCC TGCTCGACAT CAGCCCGTTT
CCCGAAGTTC CCCTGGAACT GATCGCCTCG ATTGTAGCGG TTGCCCCCCA CGTGCCAATT
CTGGCGCTGG TGGTCGACGA TGTTGATTCG CGTGCATCAG CGGCGCTGGC TGCCGGTGCA
CATGATGTGA TCAGGTCTGA CGCTGCAGCC AGTGTGCTGG TCAGCCGCCT GCGCAGCGCG
GTGGCGCATC ATCTGGACGT GCATCGAGAT CAACCGGTTT CACTCAAGGA GTTGGTGCTG
CGGAGCAGCA ATCCAGCGCT GCTGATCAAT CGTGACGGGC GGATTACGCA GGCGAACCCG
GCGGCAGTCA CCCTGTTCGG CGATCTGACC GGGCAGTTGA TCGGCGAGCC GTTTGGGACG
CCAATCGTCT CGAACCTGGT GACCACAATC GAGATTCCGC AGCGCAACGG TGCGCCGATT
ACGGCAGAGC TGTTTTTGCT CCATGTGCTC GATGAGCATT CGGACGATGC CTACCTGGCG
ATCTTGCGCG CCGCGTCGCG GCAGCATCGC CTCGATGTCG ATCTGCGCCT GATGATGGCC
GCCATTTCCA GCACCAGCGA TGGCATCGTC ATTGCCGATC TCGACGGAAT CCCGCACTAT
CAGAATCCCG CTTTTCAAGC CATGGTCGGC CTGACGCTCG ATGATCTGCG AGCGGCTGGC
GGTTTGCAGC GCCTGTATCG TGATCCCGGC GTGGCGCGCG CGGCGCTGGC AGCGGTGCGC
AACGGTCAGT CGTACCGTGG CGAGATGCGC CTGATTGATC ATCGTGGCAA TGCGCTCAAT
GTGCATGTGA ATCTCGATCC GGTGCTGGAT CCCTCAGGGC GGGCGATTGC TCTGATCGCT
GTGCATACCG ATGTGACGCA GCGAAAGTTG ACCGAAGCGC GCCTGGCGTA TCTTTCATCA
CACGATCCGC TCACCGGTCT GGCAAACCGG ACGTTGCTGC TCGACCGGTT GCAACAGGCG
TTAGATCGGC GGAATCGGGA GCGGTCGTTA CCGTGCGGCG TCCTGCTGAT CAATCTGGAT
CGTTTCAAAC AGATCAACGA TAGTCTGGGG CACGCCGTTG GCGATGAGGT GTTGATTGCC
GTTGCAGGAC GATTGAAGCA CATTACCCGA CCAGGTGATA CCGTGGCGCG CTTTGGTGGC
GATGAGTTCG CGGTGGTGAT CGACTCGCCG GGATCGGTAG AGGATATCTG GCGTGTTGCG
AAGCGCGTTC AACACACGCT GAACCATCCG GTCACGGTGC AGGATCATTC ATTGACCGTC
GGCGTCAGTA TTGGCATTGC GGTCGATGAT GGTCGGGCGA AGGATGCGAT GACGCTGCTG
CACAATGCTG ATACGGCATT GCATCAGGCG AAAGCGCGTG GACGGTCACG GATTGTCATG
TTCGAGGAAG CGATGCACAC GGAGGCTGCA CGGCAGTTGC AACTCGAGAT CGAGTTGCGC
CAGGCCGTAC AGCATCAGAC GCTGGAGATG CACTATCAAC CGATTGTCGA TCTGTGCAGT
GGTGAGTTGT ACGGCTTCGA AGCGCTTATG CGCTGGCAAC ACCCGTCCCA CGGACTGCTG
TTCCCCGATA GTTTCTTGCC GATTGCGGAG GAAGCCGGCA TCATCCCGAC GCTTGGCAAC
TGGAGCATCG CCGAAGTCTG CCGTCAGGCG CGCCGCTGGC GCGACCGGTT TGGCGCAGCC
GCCGATGTGC CGATCAGCGT CAATATCCAC AGCCAGCACC TTGATCAGGC GGATCTGTTT
GCGCAGGTCG AACAGGTGTT GCGTCAGCAG AATCTGCCCG GTGCGGCGTT GACCATCGAA
ATCACCGAGA AGGCGGCGCT GAACGATCTC GATCTGGTTC TGTCACAGTT GCTTCCGCTC
AAGGCGCTGG GTGTGCGTGT GATGCTGGAC GATTTTGGCA CCGGGTATTC GTCGCTCAGC
CATCTGGCGC GTCTGCCGGT GGACGGGGGC AAGATCGATC GGTCGTTTGT CCAGTCGATG
ATGCACGATC CGCACGCGGC GACGATCGTG CGCGCTGTTA TCACGCTTGC CCGGGAGTTG
CAGTTGAACG TGGTCGCCGA GGGGGTGGAA ACCGAAGAGC AACGCGCAGC GCTCCTCCAG
CTCAGGTGTC CGTATGCTCA GGGATGGTTG TTCGGTCGCG CCGCCGATGC CGATACGATG
ACCAGAGTGC TGGCGGCGCG ACCACATATG TCACGGTCAT GCGTTGGATG A
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| Protein sequence | MNDETPLRVL LIAQNDDVAG RIRSVFGDLA ITLEHVSPEQ ALQTLLVSRT DATLLDISPF
PEVPLELIAS IVAVAPHVPI LALVVDDVDS RASAALAAGA HDVIRSDAAA SVLVSRLRSA
VAHHLDVHRD QPVSLKELVL RSSNPALLIN RDGRITQANP AAVTLFGDLT GQLIGEPFGT
PIVSNLVTTI EIPQRNGAPI TAELFLLHVL DEHSDDAYLA ILRAASRQHR LDVDLRLMMA
AISSTSDGIV IADLDGIPHY QNPAFQAMVG LTLDDLRAAG GLQRLYRDPG VARAALAAVR
NGQSYRGEMR LIDHRGNALN VHVNLDPVLD PSGRAIALIA VHTDVTQRKL TEARLAYLSS
HDPLTGLANR TLLLDRLQQA LDRRNRERSL PCGVLLINLD RFKQINDSLG HAVGDEVLIA
VAGRLKHITR PGDTVARFGG DEFAVVIDSP GSVEDIWRVA KRVQHTLNHP VTVQDHSLTV
GVSIGIAVDD GRAKDAMTLL HNADTALHQA KARGRSRIVM FEEAMHTEAA RQLQLEIELR
QAVQHQTLEM HYQPIVDLCS GELYGFEALM RWQHPSHGLL FPDSFLPIAE EAGIIPTLGN
WSIAEVCRQA RRWRDRFGAA ADVPISVNIH SQHLDQADLF AQVEQVLRQQ NLPGAALTIE
ITEKAALNDL DLVLSQLLPL KALGVRVMLD DFGTGYSSLS HLARLPVDGG KIDRSFVQSM
MHDPHAATIV RAVITLAREL QLNVVAEGVE TEEQRAALLQ LRCPYAQGWL FGRAADADTM
TRVLAARPHM SRSCVG
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