| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3722 |
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| Symbol | |
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| ID | 5210703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4658678 |
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| End bp | 4660618 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640597317 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001278026 |
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| Protein GI | 148657821 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0146408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCG TCCGCGATAT GTTAAGCCGA CCACGCCCGC CACGCATCAG GCATGATGTT
CAGTTGCCGC GTCGGGTTGC ATACTACCCG TCACCGGTCG ACTGGCGTGA CGAGGTGATC
TACTTTTTGA TGGTTGATCG CTTCAGCGAT GGACAGGAAG ATACCCGCCC GTTGCTCGAC
CGGCGCTACC TGGCGGCAGC GCGACCGGCG CTGCCCAACG GCGACCCCTG GCGCTGGGAT
CGCTGGGCGT TGTCGGGCGG TGAACGATTT CAGGGCGGCA CGTTGCGTGG AATCATATCG
AAACTCGGCT ATCTGCAGCG GCTCGGCATC ACCACCCTGT GGCTCAGCCC GGTCTGCAAA
CAGCGCGTCC ACCTCGACAC CTATCACGGC TATGCCATTC AGGATTTTCT GGATGTCGAT
CCGCGCTTCG GCACGCGCCA GGACCTGGTC GATCTGGTGA GCGCTGCGCA TGAGCGTGGC
ATGCGGGTAT TGCTCGACAT CGTGTTCCAG CACACCGGTC CCAACTGGCG CTACCCGCCC
GATGTTCCCG GTGGCGCAGA CATGCCGCGC TATACGAGCG GGCGCTACCC GTTCGGCAGT
TGGGTCGATG CTGCGGGTGC GCCGCTCGTG GGCATTCCTG ATGTGAACGA TGCTGCCTGG
CCCGAAGAGA TGCGCACGAT CGACTATTAT ACGCGCGCTG GCGCCGGCGA TCTGGGCGCT
GGCGCTATCG ATGATCCGGA TGCCGAGCAT AAACGGTCGG ACTTTTTCAC GCTGCGCGAC
ATCAATCTCG ATGCGCCGGG CGCGCTCACC GATCTGGCGC TGTGCTACAA ATACTGGATT
GCGTTGACCG ACTGCGATGG GTTTCGAATC GATACGCTCA AACATGTCTC ATTCGAGCAG
GCGCGCAATT TCTGCGGCAC GATCAAGGAG TTCGCCGCCA ACCTGGGCAA AGCGAACTTC
TTCCTGGTCG GCGAAGTCGC CGGGGGCGAT TTTGCCGCAA CACGCTACCT CGACGCGCTG
GAGCGCAACC TGAATGCCGC ACTCGATATC GGCGAAATGC GCCTGGCGCT CGGAGATGTT
GCAAAGGGGC TGGCGCCAGC GCGCGCCTAT TTCGACGGGT TCGTGCCGGG GCTGGCAATC
ATGGGGTCGC ACCGCAATCT CGGCAGTCGC CATATCTCAA TCCTCGACGA TCACGACCAC
GTTTTTGGAA CAAAACTCCG TTTCTCAACC GATGTGATGT CGCAGCATCA TGCGGCGGCA
GCAGTCGCAC TGCAACTCTT CACGCTCGGC ATTCCATGCA TCTATTACGG CACCGAACAG
GCGCTCGGCG GTCCTGAACC ATCGGAGCGA CAGTGGTTGC CGGAGTGGGG ACGCGCCGAC
CGCTACCTGC GCGAGGCGAT GTTCGGTCCA CTCCACCCGC GCGCGTCCGG TCGCGCCGGG
ATCGACCCCC AGGCGCTCGA TACATCGTTG CCAGGATTTG GACCTTTTGG CACTGCCGGG
CATCACTGCT TCGACGAGCG CTTTCCAGTC TACCTGCGCA TCGCGGCGCT GGCAGCCCTG
CGCGCCGCCT TCCCGGTGTT ACGCCACGGT CGCCAGTATC TGCGCCCGAT TTCAAACTTC
AACCAGCCAT TCGCATTCCC GCCAGCCGGA GAAATCGTCG CCTGGTCGCG CATCCTCGAT
GACGAGGAGG CGTTGTGCGT GATCAATCCG AATGGTCTGG CGGCACGTGG CGGCGATGTA
GTGGTCGATG CCGCACTGAA CCGCCCCGGT GATACCATGA CGGTCATCCT GAATACCGCC
CAGGCCGCTG ATCCAGACGG CTATGACGGT CTGTATCCCA AAGGACGGCA ATTGACGGTT
AGAGAGCGGA ATGGAACGTC GTATGTTGAA ATTCGCAACC TGCCGCCAGC CGAGACGCTG
GTGCTGACAA ACCGACCATA G
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| Protein sequence | MTFVRDMLSR PRPPRIRHDV QLPRRVAYYP SPVDWRDEVI YFLMVDRFSD GQEDTRPLLD
RRYLAAARPA LPNGDPWRWD RWALSGGERF QGGTLRGIIS KLGYLQRLGI TTLWLSPVCK
QRVHLDTYHG YAIQDFLDVD PRFGTRQDLV DLVSAAHERG MRVLLDIVFQ HTGPNWRYPP
DVPGGADMPR YTSGRYPFGS WVDAAGAPLV GIPDVNDAAW PEEMRTIDYY TRAGAGDLGA
GAIDDPDAEH KRSDFFTLRD INLDAPGALT DLALCYKYWI ALTDCDGFRI DTLKHVSFEQ
ARNFCGTIKE FAANLGKANF FLVGEVAGGD FAATRYLDAL ERNLNAALDI GEMRLALGDV
AKGLAPARAY FDGFVPGLAI MGSHRNLGSR HISILDDHDH VFGTKLRFST DVMSQHHAAA
AVALQLFTLG IPCIYYGTEQ ALGGPEPSER QWLPEWGRAD RYLREAMFGP LHPRASGRAG
IDPQALDTSL PGFGPFGTAG HHCFDERFPV YLRIAALAAL RAAFPVLRHG RQYLRPISNF
NQPFAFPPAG EIVAWSRILD DEEALCVINP NGLAARGGDV VVDAALNRPG DTMTVILNTA
QAADPDGYDG LYPKGRQLTV RERNGTSYVE IRNLPPAETL VLTNRP
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