| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3654 |
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| Symbol | |
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| ID | 5210632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4570046 |
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| End bp | 4572016 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640597247 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001277959 |
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| Protein GI | 148657754 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.772925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGAT CATTGCCTGC CGGACATCTC TGCACAATCG ATGTGTTGAT GTTGACTATT
GCGGCGTTCG CCAGTTATGC ACTACGTCTC GAGCGTCTCG ATCTGGGTGA GCACTGGCGG
TCGTTCGTGC TGTTTGCCGG AGCAGCGCCG GTTGTTGTGC TGATGCTCTT TGGGATGACA
CGGGTCTATG CCCAGTACTG GCGCTATGCA TCGTTCCACG AGTTCAGTCT GCTGGCGTGG
GCGCTTGTGT GCGCCGGGAT CGTTCTGGAA GGCATGGTGC TGATCGGGCG CGCCCTGTTT
CCAGCGATAC CGGTTGTCCC GTTGTCGATC CCGCCGATCT TCGTCTTATC CGCGCTGACA
CTGACCGCAT TGCCGCGCCT GATGATGCAC GCGCGATTTC AACCTTCCCC CCGGCGCTGG
CATCGACAGA GCGGTAATCG TGCGCTGATC ATGGGCGCCG GTGAAGCCGG CGCAATGATT
GTGCAGAGTA TGCGTCTTGC CCGGCAGAAT AATGTTATTG TGGGCTTTGT CGATGATAAC
CCGCACAAGC GAGGCGTGCG CATCAATGGC GCGCCGGTGC TCGGTGATCG TCACGATATT
CCGCGTCTGG CGGCAGAGTA TCAGATCAAC GAGGTGATCA TCGCCATGCC GAGTGCGCCG
GGCAAAACCA TCCGTGAGAT TGTTGCGATC TGTGAACGTG CCGGTGTGCG CGCTCGCATC
ATCCCCGGAA TAGCCGAACT GGTCGATGGT CGGTTCAGCG TCAATCATAT CCGCGATGTG
CAGATCGAAG ACCTGCTCCG CCGCGCGCCG ATACAAACCG ATATGCAGGC GGTAGGGCGC
CTGATCCGTG GGCGGCGCGT GCTGGTCACC GGCGGGGGCG GATCGATCGG GAGCGAAATC
TGTCGCCACG TGCTGCGGTA CGAACCGTCT GACCTGATCA TTCTGGGGCA CGGTGAAAAC
AGTGTATTCG CCATCCACAA CGAGTTGTAC CGGTGGTTGA ACACGCCACG CGGAGAGTCG
GATAGCGTAG ACGGTGATGG ACAATGCCGG TCATACCGCA CGCCAACGCT GCATACGGTG
ATTGCCGATA TTCGCTTCTC CGAGCGCATT CACGCGGTGT TCGAGCGGTA TCGTCCGGAG
ATCGTGTTCC ATGCCGCAGC GCACAAGCAC GTTCCGCTGA TGGAAGCCAA CCCCGTCGAA
GCGGTGACCA ACAATGTGCT TGGCACGCGC AATCTGCTCG ATGCCGCAAT TGTCACCGGC
GTTGAACGCT TCGTCATGAT CTCGACCGAT AAGGCGGTCA ACCCCACCAG CATCATGGGC
AGCAGCAAGC GTGCCGCCGA ACTGCTGGTG CATCACGCAG CGAAGGTCAG CGGTCGGGCG
TTCATGGCAG TGCGTTTCGG CAACGTCCTG GGCAGTCGCG GCAGTGTTGT GTGGACGTTC
AAGCAGCAGA TTGCCGCCGG CGGACCGGTG ACAGTAACCC ATCCAGAGAT GCGCCGTTAT
TTCATGACCA TCCCCGAAGC GGTGCAACTG GTGTTGCAGG CGGCGGCGCT TGGTCGGGGC
GGCGAGGTGT TTACGCTGGA CATGGGTGAG CCGGTCAAGA TTCTCGATCT GGCGCGCGAT
ATGATCGAAC TCTCCGGGTT GCAGGTAGGG CGCGACATCG ATATCGCCTT TGTAGGGTTG
CGCCCAGGCG AGAAACTCTT TGAGGAACTG TTCCTGCCCG GCGAGCAGTA CGACCGCACA
AGCCACGAGA AGATTTTCAT TGCCAGGAAT GCCAGCCGGC TTGTCCCCGC CGATGTGCTC
GCGCTGATCG CCGATCTTGA AGAGGCGGCT CTGTCGGACG ATACGTCACG CACCGTCCGG
TTGCTCCGTC TCATCGTTCA GCGCAGTCAA TCGACGCCAC ACGAGGATGT GCACGGCGAT
CATACGCTCG AGCCTGCCAG CCTGCGCGCG CTCGCAGTGG GTGGGTCGTA G
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| Protein sequence | MSRSLPAGHL CTIDVLMLTI AAFASYALRL ERLDLGEHWR SFVLFAGAAP VVVLMLFGMT
RVYAQYWRYA SFHEFSLLAW ALVCAGIVLE GMVLIGRALF PAIPVVPLSI PPIFVLSALT
LTALPRLMMH ARFQPSPRRW HRQSGNRALI MGAGEAGAMI VQSMRLARQN NVIVGFVDDN
PHKRGVRING APVLGDRHDI PRLAAEYQIN EVIIAMPSAP GKTIREIVAI CERAGVRARI
IPGIAELVDG RFSVNHIRDV QIEDLLRRAP IQTDMQAVGR LIRGRRVLVT GGGGSIGSEI
CRHVLRYEPS DLIILGHGEN SVFAIHNELY RWLNTPRGES DSVDGDGQCR SYRTPTLHTV
IADIRFSERI HAVFERYRPE IVFHAAAHKH VPLMEANPVE AVTNNVLGTR NLLDAAIVTG
VERFVMISTD KAVNPTSIMG SSKRAAELLV HHAAKVSGRA FMAVRFGNVL GSRGSVVWTF
KQQIAAGGPV TVTHPEMRRY FMTIPEAVQL VLQAAALGRG GEVFTLDMGE PVKILDLARD
MIELSGLQVG RDIDIAFVGL RPGEKLFEEL FLPGEQYDRT SHEKIFIARN ASRLVPADVL
ALIADLEEAA LSDDTSRTVR LLRLIVQRSQ STPHEDVHGD HTLEPASLRA LAVGGS
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