| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3638 |
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| Symbol | |
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| ID | 5210616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4550286 |
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| End bp | 4551797 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640597231 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001277943 |
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| Protein GI | 148657738 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.266214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTTC CCATACTCAG AGTCGCCATT GGAATGCTGG CAGTTGTTCT GCTGATCGGC
GCTGTGCTGA TGGCATCCGG TCGCACAGGT GTTTTGCCTG CCACGCAGTC AGCGCCTGAC
TCTGCGCCGC CGCCACCGGT TGTTGCGCCC GGTACGCAAC CGATCGTGGC GAACGGCATT
GTGGCGCCGG CAACGCACGT CGATCTGCGC TTCGAGACCG GTGGGATCGT GCGGGATGTG
CTGGTGCGCG AAGGAGATGT CGTTCAGGCT GGCGATCCGA TCCTGCGTCT CGACACAAGC
GACCTGGAAC TGCGATGCGC TCAGGTGCGC GCGCAACTAT CGGCAGCTCA GGCGCAGTAT
GAACTGCTGG CCGGTCCGGT GGCGCCAGCC GATATTCAAC GCGCCCAGGC GGTGCTGGCA
CGTGCCCGGG CGCATCTACG CGAAGTGAGC GGCGCGGTCA CCCCGACTGC TCGACGGGCG
GCGCAGGCGC GACTCGAAGC CGCGCGTGTG GCGCTGGCGC GTCTCGAAGA AGGTCCGAAT
CCGGCGGATG TGCGCGCCCT GCGTGCCGAA CTGCGCCAGG CGGAAGCGGA ATTGCGGGCG
ACGCACGATC GCCTGTCGCT CGAAAAGACC ACGCTGCGTC TGCAGATGGA ACAGGCAGCC
AATGTCCTGC GCGATCGTCA GACGGAGTAT GCGCGCATCC GCGACGAGAA CCAGGCGCGA
ACCGAGCCGC TGACAGCCGA TCAGCGTGTA CGGGAAGCCA GCGCGCGACT GGCGATGGAA
AATGCCGAGA AGGCGCTCGA ACAGGCGCGC GTGGCGTATG AAGCTGCGCT CCAGGCGGAA
CGAACCGGCA TCGCCGCTGC CGAGGCGCGT GTCGAAGCTG TGAAAGCGCG CCTGGATCGC
ATCCTGGCAG GCGCCGATGC GGATCAGATC GCCGCAGCGC GCGCAGCGGT CGCGCAGGCG
GAAGACGATC TGGCGCGCCT TCAGGACGAA CGCCGTGCGG CGCTCGTCGA GATCGCCCGA
ATGGAGGTGG CAATCGCCGA AGCCGAACTG GAGCGCTTGC TGGCTGGAGC GCGCCCGGCG
GAGGCGGCGA TTGCGCGCGC ACGTGTCGAG GAAGCGCGCG CGGCGCTTCA GCAGGCGGAA
CTCGCGCTGG AACGCGCCAC ACTTCGCGCT CCGATAACCG GAGTGGTCGC AGCGCTCAAT
ATCCGCCCCG GCGAAGTCGC AGACCCCCAT CTCGTTGCCG CCAGGCTGGC GGATGTGCGC
GGATGGCGTA TCGAAACCAC CAATCTGAGC GAACTGAATG TGACGCGCCT GCGCGAGGGC
GACCCGGCGA TCATCCGTCT GAATGCGATC CCGGACCTCG AAATTCCCGG CAGGGTGACC
AGTATCAAAC CACTGGGCGC CGGTCAGGAA GGTGATGTGA CACTCTACAC CGTGATTATC
ACTCCTGATC GACTGGATGA GCGGTTGCGC TGGAATATGA CCGCAATGGT GCAGATTACA
CCGGGGCGTT AG
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| Protein sequence | MSLPILRVAI GMLAVVLLIG AVLMASGRTG VLPATQSAPD SAPPPPVVAP GTQPIVANGI
VAPATHVDLR FETGGIVRDV LVREGDVVQA GDPILRLDTS DLELRCAQVR AQLSAAQAQY
ELLAGPVAPA DIQRAQAVLA RARAHLREVS GAVTPTARRA AQARLEAARV ALARLEEGPN
PADVRALRAE LRQAEAELRA THDRLSLEKT TLRLQMEQAA NVLRDRQTEY ARIRDENQAR
TEPLTADQRV REASARLAME NAEKALEQAR VAYEAALQAE RTGIAAAEAR VEAVKARLDR
ILAGADADQI AAARAAVAQA EDDLARLQDE RRAALVEIAR MEVAIAEAEL ERLLAGARPA
EAAIARARVE EARAALQQAE LALERATLRA PITGVVAALN IRPGEVADPH LVAARLADVR
GWRIETTNLS ELNVTRLREG DPAIIRLNAI PDLEIPGRVT SIKPLGAGQE GDVTLYTVII
TPDRLDERLR WNMTAMVQIT PGR
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