| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3543 |
|---|
| Symbol | |
|---|
| ID | 5210521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4438275 |
|---|
| End bp | 4438811 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640597139 |
|---|
| Product | bidirectional hydrogenase complex protein HoxE |
|---|
| Protein accession | YP_001277851 |
|---|
| Protein GI | 148657646 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA CGCGCTTTCA GCCCCCTGCC CCCGATCAGA CGCTGCACCC CAGTGGTGAT
AACCGCTTCA AACTGCTCGA AGCCACGATG AAGAAGCACC AGTATCGTCC CGACGCGCTG
ATCGAAGTGC TGCATCGCGC GCAGGAACTG TTTGGCTATC TCTCGACCGA TCTGCTGCTC
TTCATCGCCA ACAGCCTGCA TCTTCCGCCG AGCCGGGTGT ACGGTGTCGC CACGTTCTAT
CATTTCTTCT CACTCGCGCC AAAGGGTGAG CATTCTTGCG TCGTCTGTCT TGGAACGGCA
TGCTACGTCC GTGGCGCTGC CGCAATCCTG GCAGCGGCGG AACAAATGCT GGGCATCAAA
GCCGGGCACA CGACTCCCGA CGGACGTTTG TCGCTGGAAA CGGCGCGCTG CCTGGGAGCG
TGCGGCATTG CACCGACTGT CGTCTTCGAT GGCACGGTCA CCGGTCACCA GACTCCGGAG
CAGGTGCAGG TCTGGCTTGA ACGTCTGACG GGGGAGGGGT TGAAGGCGAA AGGTTGA
|
|---|
| Protein sequence | MAATRFQPPA PDQTLHPSGD NRFKLLEATM KKHQYRPDAL IEVLHRAQEL FGYLSTDLLL
FIANSLHLPP SRVYGVATFY HFFSLAPKGE HSCVVCLGTA CYVRGAAAIL AAAEQMLGIK
AGHTTPDGRL SLETARCLGA CGIAPTVVFD GTVTGHQTPE QVQVWLERLT GEGLKAKG
|
|---|
| |