Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3475 |
Symbol | |
ID | 5210452 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 4356470 |
End bp | 4358149 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640597070 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001277783 |
Protein GI | 148657578 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.621036 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.179681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTCAGA AATACGACTA CGACGCCATT ATTGTTGGCG GCGGGCACAA CGGGCTGACC TGCGCCGGGT ATCTCCAGCG CGCCGGGTTG CGCACGCTGG TGCTCGAACG TCGCCCCATC GTCGGCGGTG CGGTCTGCAC CGAAGAAGTC ATCCCCGGCT ACAAGATCGA TGTCGGATCG TCGGCGCATA TCATGATCCA TCTGACGCCG GTCATTCGCG ACCTGGAGCT CGAACGCTAC GGGCTTGAAT ACTGCGATAT GGACCCGTTT GCGTTCTACC CTGTTCCCGA TGGCTCCGGT GCGATTGCGC TCTACCGTGA TGTGGATAAA ACCTGCGAGT CGATCGCCAG CGTATCGCCG CGTGATGCTG AGGCGTACCG GCGTTTCCTT GCCTTCTGGC GTCCGATCAA TGAGGCAGTG TTCGAGACGT TTCTCAACCC GCCAACGGTG ACCGGGTTAT TCGGGAGCAT GATCAAGGCT CAATTGAGGA CTGGTAAGTG GGATGGCACG CTCGAAACGG TGCGGCGTCT GTTCACGTCC TACGGTCAAC TGATTATCGA GCAGTTCGAG AGCGAGCCAA TGCGCGCGTT TATGGCGTGG CTTGGCGCGC AGTCCGGTCC ACCGCCGGAT GAGATCGGTT CTGGCGACCA TTTTGGCTGG TATGCCATGA TGCACCTTAG CGGCGCCAAG CATCCAAAGG GCGGGAGTGG CATGTTGACG CAGGCGATGG CGCGTTCGCT GATAGCGGCT GGCGGCGAGG TGCGCCTCGA TGCGCCGGTG AAACGGATCC TCGTGCAGAA CAACCGTGTG CAGGGGGTCG AATTGCAGAG CGGTGAGCGC ATCAGCGCCC CGCTGGTCGT ATCGAATGCG CACGTCATCA CCACGCTGCT CGACCTGGTT GGCGCCGACC ATCTGCCGCC GGGTCTGGCG GAGCGGGTGC GGAACATTCG CATCGGCAAT GGGTTTGGGA TGACGGTGCG TTGCGCTGCG GAAGCATTGC CCGACTATCC CGGCGCACCG TCGGGCGGCA AGCCGCACTG GAGCCATCAC GGGTTGCAGA TGTTGTGCCC TTCGCTTCAG TACCTGCGCA ACGCCTTTGC CGATTACCAG CGCGGATTGC CGTCGCGCGA GCCGGCGGTC ATCAGTATGA CCTTCTCCGC CATCGACCCG ACCGTCGCGC CGGAGGGGAA GCATACCGTG TTTCTCTGGT CGCAGTACTT TCCTTATGAA CTTGCCGATG GGCGCCACTG GGACGACATC CGCGAAGAAG TGGCGGATAG CATTCTCGAA GTGCTCTACC GCCACGCGCC GAATATGCGC GGCAAGATTA TCGACCGCTT CATCCAGTCG CCGCTCGACC TGGAGCGACG CCTGGGCTTG TTGCGCGGTA ATGTGATGCA TGTTGAGATG TCGTTCGACC AGATGTTTTT CTTCCGTCCG CTGCCGGAAC TGGCGAAGTA CCGCACGCCG ATCCGCGGGT TGTACCTGAC CGGCGCAAGT ACGCATCCTG GCGGCGGCGT CTTTGCCGCG AGCGGGTACA ACACTGCGCA CGTCGTGTTG GGGGATATGC GCCGTCAACG CATGGTGTGG GCTGGCGCGG CGCTGGCAGC CGGCAGCGTC GGGTGGCTGG CAGCCCGTCG GCGTTCGTCT GCTGAGCGAG GCCTGGCGAG CGAGCGTTGA
|
Protein sequence | MPQKYDYDAI IVGGGHNGLT CAGYLQRAGL RTLVLERRPI VGGAVCTEEV IPGYKIDVGS SAHIMIHLTP VIRDLELERY GLEYCDMDPF AFYPVPDGSG AIALYRDVDK TCESIASVSP RDAEAYRRFL AFWRPINEAV FETFLNPPTV TGLFGSMIKA QLRTGKWDGT LETVRRLFTS YGQLIIEQFE SEPMRAFMAW LGAQSGPPPD EIGSGDHFGW YAMMHLSGAK HPKGGSGMLT QAMARSLIAA GGEVRLDAPV KRILVQNNRV QGVELQSGER ISAPLVVSNA HVITTLLDLV GADHLPPGLA ERVRNIRIGN GFGMTVRCAA EALPDYPGAP SGGKPHWSHH GLQMLCPSLQ YLRNAFADYQ RGLPSREPAV ISMTFSAIDP TVAPEGKHTV FLWSQYFPYE LADGRHWDDI REEVADSILE VLYRHAPNMR GKIIDRFIQS PLDLERRLGL LRGNVMHVEM SFDQMFFFRP LPELAKYRTP IRGLYLTGAS THPGGGVFAA SGYNTAHVVL GDMRRQRMVW AGAALAAGSV GWLAARRRSS AERGLASER
|
| |