Gene RoseRS_3475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3475 
Symbol 
ID5210452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4356470 
End bp4358149 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content62% 
IMG OID640597070 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001277783 
Protein GI148657578 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID[TIGR02734] phytoene desaturase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.621036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.179681 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCAGA AATACGACTA CGACGCCATT ATTGTTGGCG GCGGGCACAA CGGGCTGACC 
TGCGCCGGGT ATCTCCAGCG CGCCGGGTTG CGCACGCTGG TGCTCGAACG TCGCCCCATC
GTCGGCGGTG CGGTCTGCAC CGAAGAAGTC ATCCCCGGCT ACAAGATCGA TGTCGGATCG
TCGGCGCATA TCATGATCCA TCTGACGCCG GTCATTCGCG ACCTGGAGCT CGAACGCTAC
GGGCTTGAAT ACTGCGATAT GGACCCGTTT GCGTTCTACC CTGTTCCCGA TGGCTCCGGT
GCGATTGCGC TCTACCGTGA TGTGGATAAA ACCTGCGAGT CGATCGCCAG CGTATCGCCG
CGTGATGCTG AGGCGTACCG GCGTTTCCTT GCCTTCTGGC GTCCGATCAA TGAGGCAGTG
TTCGAGACGT TTCTCAACCC GCCAACGGTG ACCGGGTTAT TCGGGAGCAT GATCAAGGCT
CAATTGAGGA CTGGTAAGTG GGATGGCACG CTCGAAACGG TGCGGCGTCT GTTCACGTCC
TACGGTCAAC TGATTATCGA GCAGTTCGAG AGCGAGCCAA TGCGCGCGTT TATGGCGTGG
CTTGGCGCGC AGTCCGGTCC ACCGCCGGAT GAGATCGGTT CTGGCGACCA TTTTGGCTGG
TATGCCATGA TGCACCTTAG CGGCGCCAAG CATCCAAAGG GCGGGAGTGG CATGTTGACG
CAGGCGATGG CGCGTTCGCT GATAGCGGCT GGCGGCGAGG TGCGCCTCGA TGCGCCGGTG
AAACGGATCC TCGTGCAGAA CAACCGTGTG CAGGGGGTCG AATTGCAGAG CGGTGAGCGC
ATCAGCGCCC CGCTGGTCGT ATCGAATGCG CACGTCATCA CCACGCTGCT CGACCTGGTT
GGCGCCGACC ATCTGCCGCC GGGTCTGGCG GAGCGGGTGC GGAACATTCG CATCGGCAAT
GGGTTTGGGA TGACGGTGCG TTGCGCTGCG GAAGCATTGC CCGACTATCC CGGCGCACCG
TCGGGCGGCA AGCCGCACTG GAGCCATCAC GGGTTGCAGA TGTTGTGCCC TTCGCTTCAG
TACCTGCGCA ACGCCTTTGC CGATTACCAG CGCGGATTGC CGTCGCGCGA GCCGGCGGTC
ATCAGTATGA CCTTCTCCGC CATCGACCCG ACCGTCGCGC CGGAGGGGAA GCATACCGTG
TTTCTCTGGT CGCAGTACTT TCCTTATGAA CTTGCCGATG GGCGCCACTG GGACGACATC
CGCGAAGAAG TGGCGGATAG CATTCTCGAA GTGCTCTACC GCCACGCGCC GAATATGCGC
GGCAAGATTA TCGACCGCTT CATCCAGTCG CCGCTCGACC TGGAGCGACG CCTGGGCTTG
TTGCGCGGTA ATGTGATGCA TGTTGAGATG TCGTTCGACC AGATGTTTTT CTTCCGTCCG
CTGCCGGAAC TGGCGAAGTA CCGCACGCCG ATCCGCGGGT TGTACCTGAC CGGCGCAAGT
ACGCATCCTG GCGGCGGCGT CTTTGCCGCG AGCGGGTACA ACACTGCGCA CGTCGTGTTG
GGGGATATGC GCCGTCAACG CATGGTGTGG GCTGGCGCGG CGCTGGCAGC CGGCAGCGTC
GGGTGGCTGG CAGCCCGTCG GCGTTCGTCT GCTGAGCGAG GCCTGGCGAG CGAGCGTTGA
 
Protein sequence
MPQKYDYDAI IVGGGHNGLT CAGYLQRAGL RTLVLERRPI VGGAVCTEEV IPGYKIDVGS 
SAHIMIHLTP VIRDLELERY GLEYCDMDPF AFYPVPDGSG AIALYRDVDK TCESIASVSP
RDAEAYRRFL AFWRPINEAV FETFLNPPTV TGLFGSMIKA QLRTGKWDGT LETVRRLFTS
YGQLIIEQFE SEPMRAFMAW LGAQSGPPPD EIGSGDHFGW YAMMHLSGAK HPKGGSGMLT
QAMARSLIAA GGEVRLDAPV KRILVQNNRV QGVELQSGER ISAPLVVSNA HVITTLLDLV
GADHLPPGLA ERVRNIRIGN GFGMTVRCAA EALPDYPGAP SGGKPHWSHH GLQMLCPSLQ
YLRNAFADYQ RGLPSREPAV ISMTFSAIDP TVAPEGKHTV FLWSQYFPYE LADGRHWDDI
REEVADSILE VLYRHAPNMR GKIIDRFIQS PLDLERRLGL LRGNVMHVEM SFDQMFFFRP
LPELAKYRTP IRGLYLTGAS THPGGGVFAA SGYNTAHVVL GDMRRQRMVW AGAALAAGSV
GWLAARRRSS AERGLASER