| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3439 |
|---|
| Symbol | |
|---|
| ID | 5210416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4315678 |
|---|
| End bp | 4317966 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640597034 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_001277747 |
|---|
| Protein GI | 148657542 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.13375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTG CCGCCAACGC TCAGAACAAT GAGACGCCTG ACACGAACGA GGTTATCAGC
CAGGAGAAGG TCGAGCAACT TATCGAGGAG TTCGAGAACG AAGCGGCGAC ACGTAAACTG
AGCGGCGCAT GGGCGTGGAT TGCCGGAATT GTTGCGGCAG CGCTCTCGAT CTACGCGCTG
TACTGGACGC AGGCGATCAT TACCACGCAG GTCTATCGCG CCACATTTCT GATGCTCGTT
CTGGCGTTGA CCTTCTTCTA CTTTCCGTTG CGCAAAGCGG CGCGCGCGAA GGTTCCCTGG
TATGATGTCG TGCTGGCAGC GCTGGGCGCT GCCAGTATGA TTTATCTGAG CCTCAATTTT
CGTGAGGCAT TGCAACGTGT GACGCAACCC ACCCCGACCG AACTGGTCAT GGGCGCCATT
ATGTTGCTGC TGGTGCTGGA AGCCACCCGG CGCACAACTG GGATGGCGCT GACGCTGGTG
GCGATCTTCT CGATCCTCTA TGCCTTGTTC GGGTATGTCT TTCCTGAACC GTTCGACCAT
CGCGGCATCT CACTGCAACG TCTGATCGGC ACCAACTATC TGACGTTGCA GGGCGTGTTT
GGCGTTCCGC TCGATGTCGC CGCTACCTTT ATCGTGTTGT TTACCATCTA TGGCGCAGTG
CTGGAGTACA GCGGCGCAGG GAAGTTCTTC ATCGACTGGT CGTTCGCAGC GCTGGGCAAA
TCGAAGAGCG GCGCCGGTCC GGGGCGAACC GTAGCGGCTG CCGGGTTCCT GCTGGGCACT
GTGTCGGGCA GCGGTGTGGC GACGACCGTG ACGCTGGGGT CGCTTTCGTG GCCTATGCTG
CGCAAAGCAG GGTACGACAA AACCGTCGCA GCCGGGATGC TGGCGGCATC AGGGATCGGG
GCCACGCTTT CGCCGCCGAC GCTTGGTGCG GCAGCGTTCC TGATCGCCGA GTATCTCGAT
ATTTCGTATC TCGATGTGTT GATCATGGCG ATTGTGCCGA CGCTGCTCTA CTATCTATCG
ATCGTTCTGA TGATCGAAGC TGATTCGCGC CGGATGAAGA CGCAACCGGT GGAGTTCAAG
ACCGAGCCGC TCTGGGATCT GACACGCAAG TTTGGCTATC ATTTCTCGTC GCTGTTTGCT
GTTGCAATCC TGATGGCGTT TGGCTATACG CCGTTCATGG CGGTCTACTG GTCAATTGTC
ATCGCTTTCT GTCTCAGCTT CCTTCGCCCT GAGACGCGCC TCTCGTCACT GAAAGCGCTG
GCTGCTGGCG TTGCGCTGGC GGTCGTGCTG ATGGCGCTGG AGAGGATCGG CGTGCTGCAG
CGTATGAATG AATCGGTGGC GGTCTTCTGG GGGTTGATGC TGACGGTTGT GATTGCGGCG
GGTATGGCGC TCTATAAGCG GGTGCGCGCC ATTCCAGGCG AAGACGAAAA TATGCGCATT
CTCCGCGCGC TTGAATATGG CGGGCGGAGT GTGGTGTCGA TTGCTGCGAC CACTGCCTGC
GCCGGCATCA TCGTCTCCGC AGTGACATTG ACCGGTCTGG GGTTGAAGAT TTCGGGCATG
ATTGTGAGCC TGGGCGGCGG TTATATCCTG ACAACGGTCT TCTTTGCGGC AGTTGCAGTC
TGGATTCTGG GGCTGGCAGT GCCGGTCACG GCATCGTACA TTCTGGCGGC AGTGATGATT
GTGCCGGCGT TGCGGCAGGT GGGGGTGCCG GAGCCTGCTG CGCATATGTT CATCTTCTAC
TACGCAGTGC TTGCCGATGT GTCGCCGCCG ACGGCGCTGG CGCCGATGGC AGCCGCAGCA
ATTACCGGCG GTCGTCCGTG GCCCTCGATG TTCATGGCAT GGAAGTACTG TCTGCCGGGT
TTTCTAGTGC CGTTCATGTT TACGATGACG ATCGATGGCA CGAGTCTGCT CCTGTTGTTG
CAGCAGGTCG GTCAGGATGC GGGCAAGGTG GCGCTGGCAT TCGAACCTGC CTGGTATGAG
GCGTTTGCCG CTGGCGGATG GGTGACAATT ACGGTCACGT TTCTGACCAG TTGTGTGGCG
GTCGGTGCGC TTGCAGTCAC GTTTGGCGGC TGGTTGATCC GTCAGGCGAA CCTTGTCGAG
CGCATCATTA TGGGCATTGG CGGTCTGGCG ATGCTGTACG CCGACCTGGG TGCGGATGCT
GTCGGGTTTG GGCTGTTTCT GGTCGGGTTG CTGATCCACG TGGTGCGGGT GCGTCAGATG
CGTCAAACTG AGCCGGTCGC TGTCGCCGCA ACGGAAGCGG AAACGCTGCG CGAACGGTCG
GTCGGGTGA
|
|---|
| Protein sequence | MSIAANAQNN ETPDTNEVIS QEKVEQLIEE FENEAATRKL SGAWAWIAGI VAAALSIYAL
YWTQAIITTQ VYRATFLMLV LALTFFYFPL RKAARAKVPW YDVVLAALGA ASMIYLSLNF
REALQRVTQP TPTELVMGAI MLLLVLEATR RTTGMALTLV AIFSILYALF GYVFPEPFDH
RGISLQRLIG TNYLTLQGVF GVPLDVAATF IVLFTIYGAV LEYSGAGKFF IDWSFAALGK
SKSGAGPGRT VAAAGFLLGT VSGSGVATTV TLGSLSWPML RKAGYDKTVA AGMLAASGIG
ATLSPPTLGA AAFLIAEYLD ISYLDVLIMA IVPTLLYYLS IVLMIEADSR RMKTQPVEFK
TEPLWDLTRK FGYHFSSLFA VAILMAFGYT PFMAVYWSIV IAFCLSFLRP ETRLSSLKAL
AAGVALAVVL MALERIGVLQ RMNESVAVFW GLMLTVVIAA GMALYKRVRA IPGEDENMRI
LRALEYGGRS VVSIAATTAC AGIIVSAVTL TGLGLKISGM IVSLGGGYIL TTVFFAAVAV
WILGLAVPVT ASYILAAVMI VPALRQVGVP EPAAHMFIFY YAVLADVSPP TALAPMAAAA
ITGGRPWPSM FMAWKYCLPG FLVPFMFTMT IDGTSLLLLL QQVGQDAGKV ALAFEPAWYE
AFAAGGWVTI TVTFLTSCVA VGALAVTFGG WLIRQANLVE RIIMGIGGLA MLYADLGADA
VGFGLFLVGL LIHVVRVRQM RQTEPVAVAA TEAETLRERS VG
|
|---|
| |