Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3435 |
Symbol | |
ID | 5210412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 4308537 |
End bp | 4309844 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640597030 |
Product | major facilitator transporter |
Protein accession | YP_001277743 |
Protein GI | 148657538 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.127971 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATGCAC CAGGTATCCA TCGCTGGCGC GCGCTAGAAA CTGGCGCGCG TCGCTATCTC CTGCACCTGG CGATCCTCAC GCTCAGCCTG TCGGTGGTGG TGCTGTACTA CAACCTGGCA GTTGTGGCGC TGGGGTATTC GCGCGGTTTT CTTGGCATTT TGCAGACGGT GACGCAGGGT GTGGCAGCGC TGTTGAGCCT GCCGCTCTGG TTAAGCGTGC AGCGCCTGGG GTTGCGCCGC GCGCTTGCGG CATCGGTAGT GCTGTACGCT GTTGGGCTGC TGCTGTTCGC CGCGCTGCCG CAGGCAGCGT CGCTGATCGT ATCTGCCGCA TTCATGGGAA TGGCTGCGGT GCTGGCGCAG GTGACGGCAG CGCCCCTCAT GATGCGCCTC AGCAATGATG CAACCCGCGA TTATCTGTTC AGCGCCAGCG CTGCGATCGC TATCGGCTTG AATGGCATTG GCAACCTCGG CGCCGGGTTC CTTGCCGATG CAGTCGCGTA TCTGCTCAAT GTTCCGCCCG ACAGCGGCGT GACCTATCGC GCGGTATTTG CCATTGCCGG GATCGGCGCA CTGGCATCGC TCCCGCCGTT GTTGCTGCTT CGTGAACCAG AGCATCCATT GGCGTCACCG TCGTCGGAAA GCGTCGCCGC TCCGACGGAA ACAGATGCGC ACTCCAGCAG CGCACCTCCC TGGCTGGCTC GTGCCCGACC ATGGTTCAGG CGTCTACCCA CGCCGCTGCA GGCACTGATG CGCAAACCGG CGCTGGTGGT CAAACTTTTG CTGCCGCCCT TCCTGATCTC ATGGGGGGCA GCGCTGCTCA TTCCCTATCT CAACCTCTAC TTCCGCGAGC AGTTTGGTCT TGACAACCGC GCGCTCGGTG CGCTTTTCGC CGGGTTCGAT GTGGCGACCG GACTGGCGGC ATTGACCGGT CCGGCACTGG CGGCGCGCCT GGGGAAGATC CATACCGTGG TCGTGACCCG CGCTGTTGGG ATTCCGCTCC TGCTTCTGTT GGGCGCCGCC TCCGACCTGT GGCTGGCAAT CATCGCCGCA CTGGCGCGCG TCGTTGCCTT CAATATGGCA GCGCCGCTCT ACGATGCCTA TGCGATGGAA CAAACCGAAG AGCGCGCGCG ACCGTTCATG ATTGGACTGC TGGGGGCGGC ATATAGCGCC GGGTTTCTCA TTGCACCCCT GATCAGCACG TTCGTTCAGG AACGGTACGG TTTCAGACCG CTGTTCGTTG CGACAGCGGC GCTGTACGCA CTTTCGGTTC TGGTGACGTG GCGATTCTTC GACCATCGTG TTTCTTGA
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Protein sequence | MNAPGIHRWR ALETGARRYL LHLAILTLSL SVVVLYYNLA VVALGYSRGF LGILQTVTQG VAALLSLPLW LSVQRLGLRR ALAASVVLYA VGLLLFAALP QAASLIVSAA FMGMAAVLAQ VTAAPLMMRL SNDATRDYLF SASAAIAIGL NGIGNLGAGF LADAVAYLLN VPPDSGVTYR AVFAIAGIGA LASLPPLLLL REPEHPLASP SSESVAAPTE TDAHSSSAPP WLARARPWFR RLPTPLQALM RKPALVVKLL LPPFLISWGA ALLIPYLNLY FREQFGLDNR ALGALFAGFD VATGLAALTG PALAARLGKI HTVVVTRAVG IPLLLLLGAA SDLWLAIIAA LARVVAFNMA APLYDAYAME QTEERARPFM IGLLGAAYSA GFLIAPLIST FVQERYGFRP LFVATAALYA LSVLVTWRFF DHRVS
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