| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3415 |
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| Symbol | |
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| ID | 5210392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4286078 |
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| End bp | 4288975 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640597010 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001277723 |
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| Protein GI | 148657518 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00208167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0804526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCAACA ACCGTCCGCT GCTGCTGCTG ATCGATGGCC ATGCGCTGGC GTACCGCGCG
TTCCACGCCC TGGCGGAGGC TGGTTTACGC TCTTCGACCG GCGAGCCGAC GTATGCGGTC
TTCGGTTTTA CGTCGGCGAT GCTCAATGCC ATCGAGGAGT ATCATCCCGA CTATGCAGCA
GTGGCATTCG ATGTCGGGAA GACCTTCCGC GACGACCTGT ACGCCGAATA CAAGGCGAAC
CGCGCTGAAA CTCCTGCCGA GTTCGAGCAG CAACTCGAGC GCATTAAGCA AGTGCTGGCG
GCGTTCGACA TCCCGATCTA TACCGCCGAT GGGTATGAAG CCGACGACGT GATCGGCACG
CTGGCGCGTC AGGCGACGGA GCGCGGCGTT GATGTGCTGA TCCTGACCGG CGATACCGAT
ACGCTTCAAC TGGTCGATGA GCATGTGACA GTGCTGCTCA ATAATCCCTA TGTGCGCGGT
TCCAAAAACA CAACGCGCTA TGGGGTCGCC GATGTGTGCG CGCGTTACAA AGGGTTGCGC
CCCGATCAAC TCGCCGATCT GCGTGGGTTG AAGGGCGATC CGTCCGATAA TATCCCCGGC
GTCAAAGGGA TCGGGGAAGC GGGCGCAATT GCGTTGCTCA ATCAGTTTGG CTCAATTGAG
AACCTGTACG ATCATCTGGA CGAAGCGCCG AAACGCTACC AGAAGCACCT GGAAGGTCAG
CGTGACGCGG CGTTGTTCAG CAAGAAACTG GCGACAATTG TACGTGATGC GCCGGTGACG
CTCGACCTTC CTGCCGCAAC TCTTGCCGAC TATGATCGCA GTCGGGTGAT TGCTGTCTTC
CAGGAACTTG AATTCGGTGC GTCACTGGTC AGGCGCCTCC CCCCGTCGCA GACCATCGCA
GCGCCGCAGG CGCTGCCGCC GGTCGAGCCG CCTGCGCCGC TTCAGGTCGA TATGTTTGCC
CCTGCAACAC CTGGACCGGA TGACGGACCG CAGCAGCTGA CCCTGTTCAA CGATATGCCG
ACGCCTGTTG CGCCGGTGGT TGAGCCGCCA GCGCACGATG CGCCTGGTGA GTATCGCGCC
GCGTGCAACG ATGCTGATCT GGAAGCAATT GTCACAGAAC TCAAGCATGC GTCGCTATTT
GCATTCGATA CCGAGACGCG CGGCACCAAT CCCCTGCGCG ACGATCTGGT GGGCATCGCC
CTGGCGACGA TCCCCGGCAG TGGATGGTAT GTTCCGCTGG GGCATACCAC CGGCGAGGCG
CAACTGCCGC GTGAGCGAGT CATTGCTGCG CTGCGTCCGT TTTTCGCCGA TCCGGCGCGC
TCCAGAATAG CGCACAATGC GAAGTTCGAC ATCGAGGTGC TGGAACGCGC TGGCATCCCG
GTTGCCGGTG TGGCGTTCGA CACGATGCTG GCAGCGGCGC TGCTCGACAA ACGGCGCAAC
CTGAAAGACC TGGCGTTCTA TGAACTGAAC CTCGCCGCTC CGCTCGAATC GATTGAAGCG
TTGATCGGGA AGGGCAAAAA CCAGGTGACC TTCGCCGATG TGCCGATTGC GCGCGCCACG
CCGTATGCCG CTGCCGACGC CGATATGACG CTGCGCCTGA AGCCAGCGCT TGAAGCGAAA
CTGCGCGCAG CCGGCAGTGT CGCAGATGTG TTCTACCGCC TGGAGATGCC GCTTGTTCCG
GTGCTGGTGC GCATGGAACA GGCAGGCATT CTGCTTGATG TTCCGTATAT GCGCGCTCTT
GGTGAGCGCA TGGGGCGGGA ACTCGAACAG ATTGAGCAGC AAATCTACGC AATTGCCGGG
CAGACATTCA ACATCAACTC CGGTGATCAG CTGAGCGAGG TGTTGTTCGG TCCCAAGATC
AACCTGCCAA CTACCGGTCT TGATCGCACC CGAACGGGGC GCTACTCGCT GACCGCGCAG
GCGCTCGAAG AACTGCAAGC CAGCGACACC ACCGGCATCA TCGAGTTGAT CCTGCGTCAC
CGTCGCCTGA GCAAACTCAA ATCGACCTAC GTCGATGAAC TGCCGGCGCT GGTTAACCCG
GAGACCGGCA GGGTTCATAC CGATTACAAC CAGCTTGGCG CCGCGACCGG TCGGTTGAGC
AGCAACTCGC CCAACCTGCA AAATATTCCC ACGCGCACCG AAGAGGGGCG CGAGGTGCGG
CGCGGTTTCA TCGCTGCGCC GGGTCACCTG CTGATCGCCG CCGACTATTC GCAGATCGAG
TTGCGTGTGC TGGCGCATAT GACCGGCGAT CCGAACCTGA TCCAGACCTT TATCGAGGGG
CGGGACATCC ACGCGGCAAC TGCCGCCCGG CTGTTTGGCG TCGGCTTCAG TGCGGTGGAC
AAGAATCAGC GACGGATCGC AAAAACTGTG GTTTTTGGCG TCATCTATGG CATCAGCCCG
TTTGGGCTGG CGCAGCGGTT GGGTATCTCG CGCGAACAGG CGCGTGGTCT GATCGATAGT
CTGTTCGATC AGTTCCCGCG TATCCGCGAC TATATCGACC GCACCCTCGA CATCGGGCGG
AGCGAAGGGT ATGTGCAGTC ACTCTTCGGT CGTCGCCGCC CCATGTTCGA CCTGCGCGTA
TCCGGTCCAC GCCGCCAGGC AGCCGAACGT GAAGCGATCA ACCACCCGAT CCAGTCCACG
GCTGCGGACA TTATGAAACT GGCAATGATC GCGGTCGATG CTGAACTCCA GCGTCGACAG
ATGCGCACCC GGATGCTGCT TCAGGTTCAC GACGAACTGA TCTTCGAAGC GCCGGAAGCG
GAGGTGGACG ATGTGGTGGC GCTGGTGCGC GAGCGGATGG AAGGCGTGTT GCACGGGATG
GAACCGCCGT TCGCTGTGCC GTTGCGCGTC GAGATCGAAA CAGGACCGAA CTGGGAAGAA
TTGACCCCGG CGGGATGA
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| Protein sequence | MSNNRPLLLL IDGHALAYRA FHALAEAGLR SSTGEPTYAV FGFTSAMLNA IEEYHPDYAA
VAFDVGKTFR DDLYAEYKAN RAETPAEFEQ QLERIKQVLA AFDIPIYTAD GYEADDVIGT
LARQATERGV DVLILTGDTD TLQLVDEHVT VLLNNPYVRG SKNTTRYGVA DVCARYKGLR
PDQLADLRGL KGDPSDNIPG VKGIGEAGAI ALLNQFGSIE NLYDHLDEAP KRYQKHLEGQ
RDAALFSKKL ATIVRDAPVT LDLPAATLAD YDRSRVIAVF QELEFGASLV RRLPPSQTIA
APQALPPVEP PAPLQVDMFA PATPGPDDGP QQLTLFNDMP TPVAPVVEPP AHDAPGEYRA
ACNDADLEAI VTELKHASLF AFDTETRGTN PLRDDLVGIA LATIPGSGWY VPLGHTTGEA
QLPRERVIAA LRPFFADPAR SRIAHNAKFD IEVLERAGIP VAGVAFDTML AAALLDKRRN
LKDLAFYELN LAAPLESIEA LIGKGKNQVT FADVPIARAT PYAAADADMT LRLKPALEAK
LRAAGSVADV FYRLEMPLVP VLVRMEQAGI LLDVPYMRAL GERMGRELEQ IEQQIYAIAG
QTFNINSGDQ LSEVLFGPKI NLPTTGLDRT RTGRYSLTAQ ALEELQASDT TGIIELILRH
RRLSKLKSTY VDELPALVNP ETGRVHTDYN QLGAATGRLS SNSPNLQNIP TRTEEGREVR
RGFIAAPGHL LIAADYSQIE LRVLAHMTGD PNLIQTFIEG RDIHAATAAR LFGVGFSAVD
KNQRRIAKTV VFGVIYGISP FGLAQRLGIS REQARGLIDS LFDQFPRIRD YIDRTLDIGR
SEGYVQSLFG RRRPMFDLRV SGPRRQAAER EAINHPIQST AADIMKLAMI AVDAELQRRQ
MRTRMLLQVH DELIFEAPEA EVDDVVALVR ERMEGVLHGM EPPFAVPLRV EIETGPNWEE
LTPAG
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