| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3397 |
|---|
| Symbol | |
|---|
| ID | 5210374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4271058 |
|---|
| End bp | 4272260 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640596992 |
|---|
| Product | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase |
|---|
| Protein accession | YP_001277705 |
|---|
| Protein GI | 148657500 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.190819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.852669 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCG AAATCAAGGT CCCGACCCTG GGCGAGTCGA TTGTCGAGGC GACGGTCGGG
GCATGGCACA AACACGAGGG CGATCCAGTT ACTGCGGGTG AGGTGCTGGT CGAACTTGAA
ACCGACAAGG TGACGGTCGA AGTGACCGCA TCCGGCTCTG GTATTCTGAG TCGTATCCTC
AAGCCGGATG GCGCCACGGT GACCATCGGC GAACTGTTGG GGGTGATCGC GGAGAAGGTG
GAAGAACCGG CTATGCCGCT CCACGACGGT GCTGGCGCCA GAGTGACGGC GACGCCGGTC
GCCCGTCGCC TCGCCGAAAC GCACGGCGTC GATATTGCCG CAATTCCCGG CAGTGGTCCC
GGCGGTCGGG TGACGAAAGA TGATGTGATC CGCCACGGCG CTGGCTCGCC AGCGCCGCTT
CCGACGGAGG CAGTTCCGGC GGTCACACCC CACACGCCCG CGCTCACGCC CGCTACGCAA
CCGGCGCCGG TTCCCGACGA CGGACGACGC GAAGAGCGCA TCCGCATGAC CCGCCGCCGC
CAGACGATTG CCGCCCGACT CGTCGAGGCG CAGCGCACCG CGGCGATGCT CACAACGTTC
AACGAGATCG ATATGAGCGC CGTGATCGAT CTGCGCAAAC GGCATCGCGA ATCGTTCCGT
GAGCGCCACG GCGTCGGTCT CGGTTTCATG TCGTTCTTCA CGAAAGCGGT GATCGGCGCG
TTGAAAGCCT TCCCGCTTCT CAACGCCGAG ATTCGCGGTG ACGAGATTAT CGTCAAGCAT
TACTACGACA TCGGCATCGC CGTCAGCACC GACGAAGGGC TGGTTGTGCC GGTGCTGCGC
AACGCAGACC GCCTCAGTTT CGCAGAAATC GAGCGCAGCA TCGAAGAACT GGCGCACCGC
GCCCGCGAGT CGAAACTCAC GATTGCCGAC CTGCAAGGCG GCACGTTCAC CATCACCAAT
GGCGGCATCT TCGGCTCACT GATGTCCACA CCGATTCTCA ACGCGCCGCA GGTTGGCATT
CTCGGCATGC ACAAGATTCA GGAACGTCCG GTGGCGCTCA ACGGGCAGGT CGTCATCCGT
CCAATGATGT ATGTCGCCCT CTCCTACGAT CATCGCATCA TCGACGGACG TGAGGCGGTA
TCGTTCCTGG TGCGGGTCAA GGAACTGGTG GAAGACCCGG AGCGATTGTT GCTGGAGGGA
TGA
|
|---|
| Protein sequence | MAVEIKVPTL GESIVEATVG AWHKHEGDPV TAGEVLVELE TDKVTVEVTA SGSGILSRIL
KPDGATVTIG ELLGVIAEKV EEPAMPLHDG AGARVTATPV ARRLAETHGV DIAAIPGSGP
GGRVTKDDVI RHGAGSPAPL PTEAVPAVTP HTPALTPATQ PAPVPDDGRR EERIRMTRRR
QTIAARLVEA QRTAAMLTTF NEIDMSAVID LRKRHRESFR ERHGVGLGFM SFFTKAVIGA
LKAFPLLNAE IRGDEIIVKH YYDIGIAVST DEGLVVPVLR NADRLSFAEI ERSIEELAHR
ARESKLTIAD LQGGTFTITN GGIFGSLMST PILNAPQVGI LGMHKIQERP VALNGQVVIR
PMMYVALSYD HRIIDGREAV SFLVRVKELV EDPERLLLEG
|
|---|
| |