| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3394 |
|---|
| Symbol | |
|---|
| ID | 5210371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4263285 |
|---|
| End bp | 4264859 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640596990 |
|---|
| Product | HEAT repeat-containing PBS lyase |
|---|
| Protein accession | YP_001277703 |
|---|
| Protein GI | 148657498 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1413] FOG: HEAT repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.232744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.348803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTC AACGAGATGT GCAAGCGCTA ATCGAAGTAC TGGGACATGC AAAAGATGAG
CAAGTGCGCC AGGCTGCGCT TGAAGCGCTG ATCGAGATTG CGCTCTCCCT GGCTGCCGAA
AAGGAAGCCA GAGAAATCGA AGATTTTTTT CAGCGATTGC TTCAGGCAGG CACGCCAGGC
GAGGCATCCC CCCAAACGCC GCCTGAGGAC GAAAACGCGG CGCGATACCA GGCCGCCATC
CAGGCGCTGG GAGAAATCGG GGCAACTGCC ATTGCGCAAC TCCTCAGCGC ACTGAAGAAT
CCACAAAAGC GTCGTTACGC CGCCCAAATC CTGGAGCAAA TCGGCTGGCA GCCTGGGCTG
GATGAAAACG GCGCTCTGTA TTGGATCGCA AAAGGCGAAT GGGATAGATG CGCCGCGCTC
GGTGGGATTG CCATAGCGCC GCTGTTACTC GTCCTTCAGG AACAGGACAA CGAAACGCGC
CGGGCTGCTG CCCATGTCTT GGGACAAATC GGCGATGCCC GCGCCGTAGA GCCGCTCCTT
GATTTACTCG TGGATCAGGA CCCAAAGGTG CGCCGGGCAG CCATCGAAGC CATTGGCCGG
ATTGGCGATC CCCACACCGT TGAGGCGCTT GAACTGGCGC TCCAGGACAG GGAGGGGAGC
GTACGCCTGG CGGCGACGAG AGCCTTGGGG CAAATTGGCA GCCCGCGCGC GGTGGAAGCG
CTGATCGCTA CCTTGCAGGG CAGGTTCGCG CATAGACTTC TTCTGGAAGA ACTGGACAAG
ATGAAATCGG AAGATGCTCA CCAGATTGCG GCGCTTCTCA GCTCTTGGGA TGAAAACAGC
GCGCCTGTGC ATCTTCTTCT CCAACAAGCG CTGAAAGCAG CCAGCCATCC GTTTGTCGTC
TATTTGCTTA CCACAATCCT GACCGAATGG AAGAACGAGC GTGCTTCTGC TATAGAGGCG
CTGGGGCGAA TTGGCGATTC CCGCGCCGTG GAACCGCTCA TCGCTGCGCT CAAGGACGAG
GACGTGAATG TGCGCTGGCC CGCCGCCCGT GCGTTGGGAG AAATCAAAGA CACCCGCGCC
ATCAAGCCGC TCATCGCCGC GCTCAAGGAT TGGCATAGCA ATGTGCGCAA AGCCGCCGCC
AAAGCGCTGG TCAAAATCGG CACACCAGCC GTGGAGCTGC TCATCGCCGC GCTCAGGGAC
GAGGACGAGA GGGTGCGCCA GGCCGCCGCC GAAGCGCTGG ATCATCTGGG CTGGAAACCT
GCCCGAGACG AAAATGCAGC GTGGTATTGG GCAACCAAGG GTAAGTGGAA CGCGTGCGTG
GATATCGGCG CACCTGCTGT GCAGCCACTT ATTACAAGCC TGCGCACAAA TGACCCCTAC
ATGCGTAGAG ACGTGGCGCA GGCATTGGTA AGACTGTATC AAAAGGCCGG TATTTCTCAA
GAGGACCGAG AGCAAATTTT GGCAGTTCGT GACCGCTTGA TACGTATTCA TGATGACCAA
CCCCATATAG ATCGATCTAG GGATTGCTCT AGACCACATA CTGATACAGA GCTGGGCGTG
GAATTCCCCT TATGA
|
|---|
| Protein sequence | MKSQRDVQAL IEVLGHAKDE QVRQAALEAL IEIALSLAAE KEAREIEDFF QRLLQAGTPG
EASPQTPPED ENAARYQAAI QALGEIGATA IAQLLSALKN PQKRRYAAQI LEQIGWQPGL
DENGALYWIA KGEWDRCAAL GGIAIAPLLL VLQEQDNETR RAAAHVLGQI GDARAVEPLL
DLLVDQDPKV RRAAIEAIGR IGDPHTVEAL ELALQDREGS VRLAATRALG QIGSPRAVEA
LIATLQGRFA HRLLLEELDK MKSEDAHQIA ALLSSWDENS APVHLLLQQA LKAASHPFVV
YLLTTILTEW KNERASAIEA LGRIGDSRAV EPLIAALKDE DVNVRWPAAR ALGEIKDTRA
IKPLIAALKD WHSNVRKAAA KALVKIGTPA VELLIAALRD EDERVRQAAA EALDHLGWKP
ARDENAAWYW ATKGKWNACV DIGAPAVQPL ITSLRTNDPY MRRDVAQALV RLYQKAGISQ
EDREQILAVR DRLIRIHDDQ PHIDRSRDCS RPHTDTELGV EFPL
|
|---|
| |