| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3371 |
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| Symbol | |
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| ID | 5210348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4226748 |
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| End bp | 4228697 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640596968 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001277681 |
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| Protein GI | 148657476 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00785192 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGCCGA ACAAACCCGA ACGATCATCG CGGCGAAAGG TTACCCTGCG CGAACTGTCC
GACCTTTACG ACCGCCTTCT CAAGCGCGAG GCGCAACTGC GTGCCGCACT CTACAGTATC
GGCGACGCAC TGATGATCAC GGATACCGAC GGGTCTATCA CGTTGATGAA CCCTGCCGCT
GAACGTTTGA CCGGATGGAC TGAATCCGAG GCGCTGGCGC TCCCAATCGA ACAGGTTTTC
CGTATTGTCG ATGAAGACAC CCGTGCGGCA ATTGAAAATC CGGTCACGCG CACGCTCCGC
ACGGGCACGG TTGTCCGGTT ACACCATCGC ACACTGCTGA TCAGCCGCGA CGGGCGCGAA
ATTCCGATCG CCGACGCTGG TGCACCAATC CGGGACGAGT CCGGCGATAT GACAGGAGTG
ATTTTGACGT TCTACGACCA GACGCTGGCG CGCGCCGCCC TGCAAGCGGC GCAGATGGCG
CGCGAGTTTG CTGAGAATAT CATCGCAACC GTGCGTGAGC CGCTGCTTGT CCTCGACAGC
AATCTGCGCG TTGTGTCGGT GAACCATGCG TTCTACCGCC TGTTCCGCAC GACCCCTGAA
GAGACGCTCG ACCGCCAGAT TTACGAACTG GGCAACCAGC AGTGGAACAT CCCCGATCTG
CGGCGTCTGC TGGAAGAGAT TCTGACCCGC GATAGCCACT TCGACGGGTA CGCCGTCACC
CACGAGTTCG AGCACATCGG TCAACGCACG ATGCTGCTGA ATGCCCGTCG CATTCGCCGT
TCCAGTGAGT TGATCCTGCT GGCAATCGAA GATATTACCG AACGCATCCA GGCGGAGCAG
AAGGTGCAGT CTCACCTGCG ACGGTTGCGC GCGCTGCGCA CGATCGATCA GGCGATTATC
TCCGCCTTCG ATATGCGCGT GACGCTCGAC ATTCTGCTTG AGCAGATCAG AACCCATTTG
CACGTCGATG CCGCTGCCCT TCACCTGCTC GATCCCCATA CACAAACGCT CACCTGTGCC
GCTGCTCACG GCTTCCAATC ACGCGCCATC CAGCAGATTA CACTGCGTAC CGGGGAAGGG
TACGCCGGGC AGGTCGCACT TGGACGACGA ACGATGTTTC TTGCCGATCT GCGCACGTTC
GAGCAGAATC AGTTCCATCT GTCCTGGATG CATCCTGACA CCTTTGTGTC ATACTGCGGC
GTGCCGTTGA TCGCCAGAGG TCAGATCAAA GGAGTGCTCG AAATCTTCCA CCGCACCCGC
CTCGATCCTG AACAGGACTG GTTCGACTTT CTGGAAGCAT TGTCCATGCA GGCGGCGATT
GCAATCGACA GCGTCGAGTC CTTTGAAACC CTGCAACGCT CGAACGCTCA GCTGGTGCTG
GCATATGAGG CGACGATCCG GGGATGGGCG CACGCACTGG ATCTGCGTGA CAGGGAGACG
GAAGGGCACT CGCAACGAGT CACAGAGTTG ACAGTGCAAC TGGCGCGCGC AGCCGGTCTG
AGTGATGAAC AGATCGCCCA CATCCGACGC GGCGCTCTCC TGCACGATAT CGGGAAACTC
GGTATACCCG ACTCGATCCT GCTCAAACCC GGCAGTCTGA CTCCGGAAGA ATGGGTCATT
ATGCGGCGGC ATCCGGAGTA TGCTTTTGGC ATGCTCTCCC CGATAGAATA CCTGCGCCCG
GCACTCGACA TCCCATACTG CCATCACGAG CGATGGGATG GCACAGGATA CCCGCGCGGT
CTGAAGGGAG ATCAGATACC GCTGGCAGCG CGTCTCTTTG CTGTTGCCGA TGTGTGGGAC
GCGCTTCAGT CAGACCGTCC GTACCGCGCG CGCTGGCCCC GTGAGCAGGC GTTGGAGTAC
ATCCGGTCAC AGGCGGGGAA GCACTTTGAT CCCGAGGTGG TGGAACTCTT CCTGAAGGTT
ATTGGCGCGG AAGCGGACAT TGCCGACTGA
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| Protein sequence | MPPNKPERSS RRKVTLRELS DLYDRLLKRE AQLRAALYSI GDALMITDTD GSITLMNPAA
ERLTGWTESE ALALPIEQVF RIVDEDTRAA IENPVTRTLR TGTVVRLHHR TLLISRDGRE
IPIADAGAPI RDESGDMTGV ILTFYDQTLA RAALQAAQMA REFAENIIAT VREPLLVLDS
NLRVVSVNHA FYRLFRTTPE ETLDRQIYEL GNQQWNIPDL RRLLEEILTR DSHFDGYAVT
HEFEHIGQRT MLLNARRIRR SSELILLAIE DITERIQAEQ KVQSHLRRLR ALRTIDQAII
SAFDMRVTLD ILLEQIRTHL HVDAAALHLL DPHTQTLTCA AAHGFQSRAI QQITLRTGEG
YAGQVALGRR TMFLADLRTF EQNQFHLSWM HPDTFVSYCG VPLIARGQIK GVLEIFHRTR
LDPEQDWFDF LEALSMQAAI AIDSVESFET LQRSNAQLVL AYEATIRGWA HALDLRDRET
EGHSQRVTEL TVQLARAAGL SDEQIAHIRR GALLHDIGKL GIPDSILLKP GSLTPEEWVI
MRRHPEYAFG MLSPIEYLRP ALDIPYCHHE RWDGTGYPRG LKGDQIPLAA RLFAVADVWD
ALQSDRPYRA RWPREQALEY IRSQAGKHFD PEVVELFLKV IGAEADIAD
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