| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3322 |
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| Symbol | |
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| ID | 5210297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4169284 |
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| End bp | 4172898 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640596918 |
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| Product | transcriptional activator domain-containing protein |
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| Protein accession | YP_001277633 |
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| Protein GI | 148657428 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.11039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.190141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGTAC AATATATTCA GGTCGCGGGT GCGCACTATC GAGCGCTGCC CGTGTTCGAG
CGCAGTGTTG CGCGGGTCTC GGCAAAACCA GATGTGTCTG CGCTGACGTC CCACTTTGCC
GATCATCGTC AGTACAGACA GGAGAAGCAT GCCGGGAGTC ACCATCGCTC TTCCGATACA
CCCGTGCCTG ATGACCGCAT CGAATCCGCT CATCGCAATC GTATGGCGCA AACGTTGCTG
CCGCTGAAAC TTGTTCCTCC GCCGTTGCGT GAGGGCGTGT TGCTTCGCCC CGATCTCCAG
GCATTGCTGG CCGAGGTGCG TCTGCATCCC CTGACCGTTG TGACGGCGCC GGCCGGGTAT
GGGAAGACCA CCCTGCTGGC GCAATGGGCG CAGGAGTTGG GGCGTACCGG TGCACCGGTC
TCCTGGTTGA CGCTCGATGT CGGCGACCGT GATCCGGCGT TGTTTCTGGC GTATCTCATT
CGCGCCTTTC AAATGGCATT CCCCGCGTTG GGGCGCGATG CAAGCCGGGT GCTGTCGAGC
GCTGCGAGTC TCGAACGCGA TTGGCCCCTG GTCGCCGGGG CGCTGTGCAG CGATCTGCAA
CGTCAGGTGC TGTCGGCAGC CTTTCTCTTT CTGGACGATC TGCATCAGGT GATCGATTCG
GCGGTCATCG GGCAGATTCT GGGCTATCTG TTGCGCGCTG CACCACCGAC GTTGCACGTT
GTAGTCGCCT CGCGGCGCGA AGTGCATATC CCACCATTAT CGCGTTTGCG CACGGAAGGT
CGTCTTGTCG AGGTGCGTCA GGCTGATCTG CACCTGACGC CGGAACAGGC GCGGCAGTTG
CTCACCATTC AAGGCGTGGC GCTCTCTGAT GAGGAACTGA CAACACTCCT CGCGCGCACC
GAGGGGTGGG CGTTGAGCCT GCAACTGGCT GCCCGCGCGC TTGCTGAACT CCCCGCCGAA
CGGCGCAGCG CCTTCGTCGA GGCATTGGGC GGCGGGAGTG AGCAGCTGCT CTCCTATCTG
GCAGACGAGG TGCTCGCCGA TCTGCCTTCC GATGTTCTGG AATTTCTCCG CCTCGCCGCC
CTTCCGCCAC ACTTCGACGC CGATCTGTTG ACGGCGGTTC TGTTGCGGGA CGATGTTCCC
TACCTGTTGC GCCGTGTCCG CACCCTTGGT TTGCCGCTCA CTCCGCTCGA TGATCAGGGA
GAACGACTGC GCTTTCATCC GCTGTGGCGT GAACTGTTGT TGCGCGGCAT CGATGAGTTC
GTCGACGATG AGACGCTGGC GGCGTTTCAC CGTCGTTTCG GTCGTCAATT CGAGATGCGG
GGCGAACTCG AAGAAGCGCT CGAGCATTAT GCGCACGCGG GCAGTGTTGA TAATCTCGAA
CGGGCGTTGC TCGAACGGGC GTGGCCCCTC CTCAACTCGC CGCGGCGCGA TACAGTGCGA
CGCTGGATTG AACAGATCCC GGTTGAGCGC CGTGACGCCA ATCCCGAACT TTTGTACATG
TGGGGATACA GCCAGATCGT TTCCGATCCG TCGCGGGCGG CGCAGATTAT CGAGCATGCC
GCCGAATTGT TCCGGCGTTC AGGCGCGCAT GCGCGCGAAT TGCGCGCCTA CTCCGATCTC
GCAACGCTGC TCTTCTGGCA GGCGCGTCCC GCCGATTTCG CCGCTGTCTG TGTGCGTGCT
ATTCGCGCGG CCAACCTGGC GCGCGATGCC TGGTCGCGGG GCGCTGCGCT GACCTGTGTC
GCCGCCATGC TGGCGATCCG CGGTCGCCTC TCCGCTGCGC TGCGCGTTGC CCGTCACGCG
GCTGCGCATC CGCTGAATCC AGCCTGGCAC TGGTTGCTTG CGATGATCGT CACGTCGATC
CATAACCAGC TCGGTCGCCC GGATGATGCG CTGGCAGTCG TCGATGAAGC CCTGCAGTCG
AGCCAGATCG ACAGCAATGA CCGCATGCGA CAGAATTTGT TGCGTCAACG TGCGATGGCG
CTGTACCAGA TCGGACAGCC TGCTGAGGCA ATCACCCTGG CGCTCGATGT TCATCGCTAT
CTGCTCGATT ATTATCGCGA CGGTACGGCT GGCGTCAGCG CCGCGCAACT TGCGCTGCTC
CTTTCGTTGC AGGGGCGCTT CGATGAGTCG GCGTTCTACA TTGCCCAGGC GCGCGCCGCC
TTCCACGACC TTGGTGCACT TGCGCCGCTT GCGTCATTGC AGGTTATCGA ACTGTACAAC
ATGCGGGGGC GCGGGCAGGC GGCGCGCGCG GCGGCGGCGG CCAGCGCATT CGTGCGCCGT
CTCGATGAGG TGGAAGGCGT TGCGCCCGAT CTGCGCCTGC GCCTGTTACT GGCGATTGTG
CTCGGTGAAG CGGGTGAGCA TCGCCAGGCG CTCGACCTGT TGCAGACGAC GGTGCAGCAG
ATGCAGCACC GTGGCTATCG TCTGTTTCTG GCGTCCGCCT GTCTCTACGG GGCAGCGCTC
GCCGGCGTGT GCGGTGAGGG AGCGTTGCGT GATGCATGGC TGCGCACCGG TTGGACGATT
GCCGCCGATG ATCGGAGTCG TTTCCTGCCA ATGATGCCCG TTTCTGCGTT GAAAGATGTG
GCGATCGCTG CATTGCGCAC CGGGATCGCG CCCGATGCGG TTGGTCGCAT TTTGCCGCAC
CATGTCGGGG ATGAAGCGGT CGAACTATTG CAGGACGCGC TGAACGATCC AGACCCATCG
GTGCGGGCCC ATGTGGTGCG ACTGCTGGGA GAGGTTGGCG CAGCTGCCGC CTATCCGGCG
CTGCGTTTGC TGTTGAAGGA CCGCAACCCT GCCGTGCGTC AGGCTGCCGA GGAGTCGCTC
AATCGTCTGG TCTATCGTCC GCCGTATCCG TTGCGCATTC GGATGCTCGG CGCCTTTACC
GTCTGGCGCG GCGATCACGA GATCCGTGAT CGCGAGTGGC GCAGCAGTAA AGCCCGTCAA
TTGCTTCAAC TGTTGCTCAC CGAACGCGGA CGCGCCCTTC CACGCGAACG GGTGGTCGAG
GCGCTCTGGC CCGATATGGA GATCGAGGCG GCAACCAATA ATTTGCGGGT CACGATCAAT
CGGTTGAGTA AGGCGCTCGA ACCGGACCGC CCTGAAGGAG CGCCGTCCGC CTACCTGATC
CAGCAGGGTG AGACGTATGC GTTCAATACC GCCAGCGACC ATCACATTGA TGTGGTTGAG
TTCACCGATG CGGTTGCCGA GGGGCAGCGC GCCGATCAGC GCGGTCAACG CACCGCAGTG
ATCGCCGCCT ACCGACGCGC CGTTCAGTTG TATGGCGGTC CGTACCTGCC CGACAATATG
TACGAAGACT GGACGGTCGT CGAACGTGAA CGCCTGGCGT TAATGTTCGT CGAGAGTGCA
CTCCGCCTGG GAACGCTGCT CCTCGAAGAA GGCGCTGTGC ACGAAGCAAT CGGTCTGGGA
TGGCGAGTAG TCGAGATTGA TCAGACCCAG GAAGAGGCGT ACCGTTTGTT GATGCGCGCC
CATGCCGCGC TTGGCGAACG AAGCACAGCG TTGCGCCTGT ATGCGCGCTG CGTTGACGTA
TTGCAGAATG AACTGGGGAT CGCTCCGCTG CCCGAGACGA CTGCGCTGTA CCACGCACTG
CGCGATTTGC GCTGA
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| Protein sequence | MRVQYIQVAG AHYRALPVFE RSVARVSAKP DVSALTSHFA DHRQYRQEKH AGSHHRSSDT
PVPDDRIESA HRNRMAQTLL PLKLVPPPLR EGVLLRPDLQ ALLAEVRLHP LTVVTAPAGY
GKTTLLAQWA QELGRTGAPV SWLTLDVGDR DPALFLAYLI RAFQMAFPAL GRDASRVLSS
AASLERDWPL VAGALCSDLQ RQVLSAAFLF LDDLHQVIDS AVIGQILGYL LRAAPPTLHV
VVASRREVHI PPLSRLRTEG RLVEVRQADL HLTPEQARQL LTIQGVALSD EELTTLLART
EGWALSLQLA ARALAELPAE RRSAFVEALG GGSEQLLSYL ADEVLADLPS DVLEFLRLAA
LPPHFDADLL TAVLLRDDVP YLLRRVRTLG LPLTPLDDQG ERLRFHPLWR ELLLRGIDEF
VDDETLAAFH RRFGRQFEMR GELEEALEHY AHAGSVDNLE RALLERAWPL LNSPRRDTVR
RWIEQIPVER RDANPELLYM WGYSQIVSDP SRAAQIIEHA AELFRRSGAH ARELRAYSDL
ATLLFWQARP ADFAAVCVRA IRAANLARDA WSRGAALTCV AAMLAIRGRL SAALRVARHA
AAHPLNPAWH WLLAMIVTSI HNQLGRPDDA LAVVDEALQS SQIDSNDRMR QNLLRQRAMA
LYQIGQPAEA ITLALDVHRY LLDYYRDGTA GVSAAQLALL LSLQGRFDES AFYIAQARAA
FHDLGALAPL ASLQVIELYN MRGRGQAARA AAAASAFVRR LDEVEGVAPD LRLRLLLAIV
LGEAGEHRQA LDLLQTTVQQ MQHRGYRLFL ASACLYGAAL AGVCGEGALR DAWLRTGWTI
AADDRSRFLP MMPVSALKDV AIAALRTGIA PDAVGRILPH HVGDEAVELL QDALNDPDPS
VRAHVVRLLG EVGAAAAYPA LRLLLKDRNP AVRQAAEESL NRLVYRPPYP LRIRMLGAFT
VWRGDHEIRD REWRSSKARQ LLQLLLTERG RALPRERVVE ALWPDMEIEA ATNNLRVTIN
RLSKALEPDR PEGAPSAYLI QQGETYAFNT ASDHHIDVVE FTDAVAEGQR ADQRGQRTAV
IAAYRRAVQL YGGPYLPDNM YEDWTVVERE RLALMFVESA LRLGTLLLEE GAVHEAIGLG
WRVVEIDQTQ EEAYRLLMRA HAALGERSTA LRLYARCVDV LQNELGIAPL PETTALYHAL
RDLR
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