| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3310 |
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| Symbol | |
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| ID | 5210285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4158451 |
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| End bp | 4160178 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640596906 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001277621 |
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| Protein GI | 148657416 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCGC TCACATGGTG GCAGACGGCA GTGTTCTACC AGATCTATCC GCGCAGTTTC
GCCGACGGTA ATGGCGACGG CATCGGCGAC TTTGCGGGCA TGATCGACAG ACTCGACTAC
CTGCGCGATC TGGGGGTCGG GGCGCTCTGG CTCTCGCCGC ACTATCCTTC CCCGAATGCG
GACTGTGGCT ACGACATCTC GGACTATACC GGCGTCGCGC CTGAATACGG AACGCTTGAT
GATTTCCGGC GTTTTCTCGA CGGCGCCCAC GCGCGCGGTA TGCGGGTGCT GCTCGATCTG
GTGCTCAACC ATACGTCCGT GGAGCATCCC TGGTTCAGGG AGTCGCGGTC GAGCCGGGAT
AACCCGAAGC GCGACTGGTA TATCTGGCGC GACCCTGCAC CTGACGGCGG TCCGCCGAAT
AACTGGTATT CGGCGTTCGG CGGTTCTGCC TGGACATTCG ATGAGACGAC CGGACAGTAC
TACTACCACT TTTTCTTCAA GGAACAACCC GACCTGAACT GGCGCAACCC GGATGTGAAG
CGGGCGATGT GGCAGGCGAT TCGTTTCTGG CTCGATATGG GAGTGGACGG TTTTCGTCTC
GATGCGATCG ACACCATCTT TGAGGACCCC GCGCTCACCC CGCACGAATC GCGGTTGTCG
CAGGTTGAGA TGCTGCGCAT CTGGCGCGAA AACCGTCCGC CGGAAGAGAC GAAAGAACTC
TGGGAGCAGT TTGCGCTGAT GTTTCGGTAT CAGGTGCAGC AACCAGGGTT GCACGAGTTG
ATGAAAGAAT TGCGCGCATT GGTGGACGAA TATCCAGGAA ATCGGGTGCT GATCGGCGAA
GGGGACGACA TTGCATACTA CGGCAACGGC AGTGATGAAC TGCACCTGGT GTTCAATTTT
CCGCTTATGC GCACCAATCG GTTGACGCCA GCATGGGTGC GTGCCAATCA GGCGGAACGT
CTGGCAGCGT TGCCCCCCGG CGCCTGGCCC TGCAACACAT TGGGGAATCA CGATGTCGGG
CGCATGTGGA CGTCATACGG CGATGGGGTG AACGATGCGG CGCTTGCCCG TCTGCACGCG
GCGATGCTGC TGACGCTGAA GGGCACGCCG GTGCTCTACA ACGGCGAAGA GATCGGCATG
ACCGATCTGT TGCTCGAACG GTTTGAACAG TTGCGCGACA ATCAGGCGGT CAATCTGTAT
CACCTGGCGG TCGGCGATGG CATCGATCCC GCTGAGGCAA TGAAGATGGC AGCAGCGATC
AGCCGTGACC GCTGTCGCAC GCCGTTCCAG TGGGCGAATG CGCCGAATGC TGGATTCAGT
CCGCCGGGCG TGGCAACCTG GTTGCCGGTC AACCCCAACT ACGCGCAGGG CGTGAATGTT
GCCGATCAGG AACAGAACCC GGATTCGCTG CTCAACTACT ACCGCCGCCT GATCGGTGCG
CGCCAGGCGA TACCGGCATT GCTGGCGGGC GACTATGCGC CGCTCCATCC TGACGAGGAT
CGCTATCTGG CGTTTCTACG CACAACGCCG GATCAGCGCT GCCTGGTTGT GCTCAACTTC
TCGCCGGAGC CGGTCACAAC CGGCTTCGAT CTGAACGGCG CCCGTTTGCG CACACTCTTT
TCAAGCCACC CCCGCCCGAC CCGCGACGAA CATCCGGAGC GCCTGACCCT GGCGCCGTTC
GAGGCATACA TCGGCGAGGT GATACGGATT GGGACAGATT GGGAATAG
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| Protein sequence | MQSLTWWQTA VFYQIYPRSF ADGNGDGIGD FAGMIDRLDY LRDLGVGALW LSPHYPSPNA
DCGYDISDYT GVAPEYGTLD DFRRFLDGAH ARGMRVLLDL VLNHTSVEHP WFRESRSSRD
NPKRDWYIWR DPAPDGGPPN NWYSAFGGSA WTFDETTGQY YYHFFFKEQP DLNWRNPDVK
RAMWQAIRFW LDMGVDGFRL DAIDTIFEDP ALTPHESRLS QVEMLRIWRE NRPPEETKEL
WEQFALMFRY QVQQPGLHEL MKELRALVDE YPGNRVLIGE GDDIAYYGNG SDELHLVFNF
PLMRTNRLTP AWVRANQAER LAALPPGAWP CNTLGNHDVG RMWTSYGDGV NDAALARLHA
AMLLTLKGTP VLYNGEEIGM TDLLLERFEQ LRDNQAVNLY HLAVGDGIDP AEAMKMAAAI
SRDRCRTPFQ WANAPNAGFS PPGVATWLPV NPNYAQGVNV ADQEQNPDSL LNYYRRLIGA
RQAIPALLAG DYAPLHPDED RYLAFLRTTP DQRCLVVLNF SPEPVTTGFD LNGARLRTLF
SSHPRPTRDE HPERLTLAPF EAYIGEVIRI GTDWE
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