Gene RoseRS_3223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3223 
SymbolalaS 
ID5210198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4061299 
End bp4064094 
Gene Length2796 bp 
Protein Length931 aa 
Translation table11 
GC content61% 
IMG OID640596819 
Productalanyl-tRNA synthetase 
Protein accessionYP_001277534 
Protein GI148657329 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0013] Alanyl-tRNA synthetase 
TIGRFAM ID[TIGR00344] alanine--tRNA ligase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATACGA CATTACCACA TAGTACTTCT TCCAGACGCC TCTGTGGGGC GACATGTCTG 
GCAAAGGCTA TTATCGCTAT GAAAAAACTT TCCAGCGCCG CGATTCGTGA GCAGTTTTTG
CGTTTCTTTG AAGAACGCGG TCACGTCCGG GTACCCAGTT CATCGCTCAT CCCTGGAAAT
GATCCAACCC TGCTGTTTAC CAACTCCGGT ATGGTGCAGT TCAAGGATAC GTTCCTGGGA
CTGGAGCAAC GCCCATACAC CCGCGCCACA ACGGTTCAGA AGTGTCTGCG CGTCTCGGGG
AAGCACAACG ATCTCGAAGA GGTCGGTCCG TCGCCGCGTC ACCATACGTT CTTCGAGATG
CTCGGCAACT TCTCCTTCGG CGATTACTTC AAATCCGAGG CGATTCCCAT GGCGTGGGAG
TTGTTGACGA AGGTGTTCGA ACTCCCGGTT GAACGTTTGT GGTTTACCGT CTTCGAGGGC
GACGACGAGG TGCCGCCTGA TGACGAAGCA GCGCAGTTGT GGGTTGCAGC CGGCGCCGAT
CCGGACCGTG TTCTTCGCTT CGGACGCAAG GACAACTTCT GGGTGATGGC GGATACCGGT
CCGTGCGGTC CGTGTTCCGA GATTACGATC TATATCGGCG ATGATCTGCG GGCGATGAGT
GCGCAGGGGG TCAATTCCGA CGATCCGAAC TATGTCGAGA TCTGGAACAA TGTGTTCATG
CAGTTTGAGC GCAGCACCAT GCAACCGCTC CATCGCCCGT CGGTCGATAC CGGTATGGGG
CTCGAACGCA TGGCGATGGT CATGCAGGGG GTTCATTCCA CCTATGAGAC CGATCTGTTC
ATTCCGCTGA TTGAGCGCCA GCTGGCGCTG CTCGGCGCGG ACGAGTCGAC CTATCGCGCG
CGGGTTGCGC CCTACCGCGC CGTCGCCGAC CATAGCCGCG CGGTGGCGTT CCTGATCGCC
GACGGGGTGC TTCCAGGCAA TACAGGGCGG TCGTATGTGC TGCGCCGCAT TCTGCGCCGC
GCAGTCTACC AGGGTCGCAC GGTCGGCTTC GAGAAGCCAT TCCTGGCGGA GATCGTCGCA
GCGGTGATCG AGCAGATGGG TGCGGTCTAT CCCGAATTGC GCGAACGCGC CGATTTTATC
CTGGAAACGG TCGATCTGGA AGAACGCCAG TTCCTGCGCA CCCTTTCGGG CGGAATGAGC
ATTCTGAACA GTGTTATTGA ACGGGTGCGC GCCAGCGGCA GTACGGTCAT TCCTGGCGAT
GATGCATTTA CGCTCAAGGA TACCTATGGC TTTCCGCTCG ATCTGACGCA GAAAATCGCT
GCCGAACACG GTTTGACCGT CGATGAGGCA GGATACGAGC GGCGCATGGA AGAACAGCGT
GACCGGGGCC GTCGTGCGGC ACAGTTCAAA CGGGCAGCCG AGGCGGAAGT ATGGGCGGGG
ATCGATCTGC CGCCAACCCG CTTCACCGGC TATGCGGCGG TTTCCGGCAG CGGCGTGGTG
CAGGCGATTG TCGTCGCTGG CGATCAGGTC GCCGAAGCCA GCGCCGGTCA ACAGGTGCAG
ATCGCGCTCG ACAGCACGCC GTTCTATGCC GAAAGCGGTG GTCAGGTCGG TGATACCGGC
GTCCTGATCG GTCCGCGCGG TCGTGTCCGG GTCGAAGATG TGCAACGACC CGTGCCCGGC
GTGATTGTTC ATTATGGCGT GGTCGAGAGT GGCAGCGTGA TGCTGCACGA TCCGGTCGAC
GCGCACGTCG ATAGTGGGCG TCGTGCCGCT ATTATGCGCA ACCATACCGC AACCCACCTG
CTCCATCGCG CCCTGCGTGA TGTGCTCGGC GAACATGCCG CGCAGGCTGG CTCACTCGTT
GCGCCGGATC GCCTGCGTTT CGACTTTACG CATACGCGCC CGCTGACCCC GGAACAACTG
CACGAGATCG AGCGACGCGT CAATGCCTGG ATCCGTGCCG ATACGCCGGT TGTCTGGCAG
GAGTTGAGTT ATCAGGCGGC TATCGAAGCC GGCGCTATCG CGCTGTTCGG CGAAAAATAT
GGCGATGTGG TGCGCATGGT CACGATTGGA TGCGTCAACG GTCATGATGC GCCTTCACCT
GCTGCGCTGG CTGAACGCGA ACTGGCAGGC TTTCCGATGT GCTCGCGTGA ACTGTGCGGC
GGAACCCATG TCGGGCGGAG CGGCGAGATT GGACTGTTCC GCATCATTTC GGAAAGTAGC
GTCGCTGCTG GCGTGCGACG CATCGAGGCA TTGACCGGTC CTGAAGCCGA AGCGTGGGTC
GATGCCCAGA TTGCAACACT CCAGGCGGTT GCCGCTCGCG TCGGAGCGCC TCAAACTCAA
CTGGTCGAGC GTGTCGAGGC GTTGATCGCC GAATTGAAGC AACGTCAGCG CGCCCTCGAT
GAGTTGACCG CCCGCATGGC GCGGTCCAAC CTGGAAGGGT TGCTCGCCAG CGTGCAATCG
GTGGGCGACA TTCGCTTCCT GGCAGCACAG GTCGAAGCGC CCAACGCCGC GCGATTGCGC
GAAATGGGCG ACTGGCTGCG CGACAAATTG GGGTCGGGCG TGGTGGTGCT GGCGACGGTA
TTCGACGGCA AAGCCCAGAT TCTGGCAATG GCAACGCCCG ATCTGGCGGG GAAACGGATC
CATGCTGGCA ATCTCGTGAA GGCGCTTGCG CCGATCGTCG GCGGCAGCGG CGGCGGTCGC
CCCGATATGG CGCAGGCTGG CGGACGTGAT AGTGCGAAGA TACCTCAAGC GTTGGAGCAT
GTTGCCGCAG TGATAGCGGC GCAGGCGGGG GTTTGA
 
Protein sequence
MHTTLPHSTS SRRLCGATCL AKAIIAMKKL SSAAIREQFL RFFEERGHVR VPSSSLIPGN 
DPTLLFTNSG MVQFKDTFLG LEQRPYTRAT TVQKCLRVSG KHNDLEEVGP SPRHHTFFEM
LGNFSFGDYF KSEAIPMAWE LLTKVFELPV ERLWFTVFEG DDEVPPDDEA AQLWVAAGAD
PDRVLRFGRK DNFWVMADTG PCGPCSEITI YIGDDLRAMS AQGVNSDDPN YVEIWNNVFM
QFERSTMQPL HRPSVDTGMG LERMAMVMQG VHSTYETDLF IPLIERQLAL LGADESTYRA
RVAPYRAVAD HSRAVAFLIA DGVLPGNTGR SYVLRRILRR AVYQGRTVGF EKPFLAEIVA
AVIEQMGAVY PELRERADFI LETVDLEERQ FLRTLSGGMS ILNSVIERVR ASGSTVIPGD
DAFTLKDTYG FPLDLTQKIA AEHGLTVDEA GYERRMEEQR DRGRRAAQFK RAAEAEVWAG
IDLPPTRFTG YAAVSGSGVV QAIVVAGDQV AEASAGQQVQ IALDSTPFYA ESGGQVGDTG
VLIGPRGRVR VEDVQRPVPG VIVHYGVVES GSVMLHDPVD AHVDSGRRAA IMRNHTATHL
LHRALRDVLG EHAAQAGSLV APDRLRFDFT HTRPLTPEQL HEIERRVNAW IRADTPVVWQ
ELSYQAAIEA GAIALFGEKY GDVVRMVTIG CVNGHDAPSP AALAERELAG FPMCSRELCG
GTHVGRSGEI GLFRIISESS VAAGVRRIEA LTGPEAEAWV DAQIATLQAV AARVGAPQTQ
LVERVEALIA ELKQRQRALD ELTARMARSN LEGLLASVQS VGDIRFLAAQ VEAPNAARLR
EMGDWLRDKL GSGVVVLATV FDGKAQILAM ATPDLAGKRI HAGNLVKALA PIVGGSGGGR
PDMAQAGGRD SAKIPQALEH VAAVIAAQAG V