Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3213 |
Symbol | |
ID | 5210184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 4050997 |
End bp | 4052505 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640596805 |
Product | multidrug resistance efflux pump-like protein |
Protein accession | YP_001277524 |
Protein GI | 148657319 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.108943 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCTGGT TCTCGATGAA ACGAACGGTG ATGACAGCGG CAGCGCTTCT GGCGCTGACC GCCTGTGGCG GTCAGGCGAC CGCCATCCAG CCCACCCCCA TACCGCCTGT GCGCGCTGAT GAGCGCGTGG TCGCCGAAGC CCGCGTTGTG CCGGCACGCA GCGCTGCGCT GGCGATGAAT AGCAGCGGCG TGGTGGCGGA CGTGCTTGTA TCAGAAGGCG ACACAGTTCA GGCGCAACAG GTGCTGCTCG TGCTCGACAC CCGACGACAA GAGGCAATCG TTGCACAGGC GGCAGCCGAT AAGGCGCGCG CCGAAGCGAC ACTGGCGCGT CTGAAAGCAG GACCGACCGA AGAGGAGATT GTCGCTGCCG AAGCGCAGGT GCAGCGTGCC GAAGCACAAT TGCAGCAGGT GCGCGGCAAT GTCACCGACC GCGACATCCT TGCCGCCGAA GCCCGTCTCC AGCAGGCGCG TGCGCGCCTT GCAGAACTTG AGCGCGCCAG CAACCGCCCC GAAGTCGTTC AGGCAGGCGC ACGCCTGGAA GAAGCACGCG CCACGCTCGA AGCCGAAAAA GCGCGTCTCT CCGCCGCCAA GACCGATGCC CGTCTGCGGA TGGAACAGGC TGTCGAAGCG CTCACCCGCG CTCAATCAGC GTGGGTCGTC GCAAAAAATG AGTGGGATAG CGTACAGGCC GACGGTCAAC ACCCGACGCT CGGTTATGGA TTGAACGAAG CTGAGAAGCG CAAATTCTAC GATGCGTTCG TTCAGGCGGA AACAGCGCTG CGGAGCGCCG AAAGCAGCCT GGAACAGGCG CGCATCGCAT ACGACGCCGC GCGTCAGGCG GAAGCGGCGG GCGTCAGCGC CGCCGGGCAG CGCGTCGTCG AGGCGCAGGC GGCGTATGAC CGCATTGTCC GCAGCACAAA CAACGATGAA CTCGCTGCGG CGCGCGCTGA AGTCGCCGAT GCCCAGGCGC GCCTGGAGAG ACTCCGTGGC GAAGAACGCG CCGGCGCCAT CGCCGTCGCC GAAGCGACGC TGGCGGAAGC CCGCGCCAAC CTGGCACGGT TGAAAGCCGG TCCTACTGCT GCGCAGATCG CCGAAGCAGA GGCCGATGTA CGCCGCGCCA CTGCCGCGCT CCAGGCGGCA CAGACACAAC TCGATGAATT GACCCTGCGC GCGCCATTCG GTGGTCTGAT TGCTGCGGTC AATATCAAAC CGGGCGAGTA TGTCACCCCT GGCACACCAT TGATTACCAT CGGCGATCCC GGCGCCTGGC AGATCGAAAC AACCGACCTG ACCGAACTCA GCATCGTCAA AGTGCAACCT GATGCACCGG TCACGATCAC TTTCGATGCA CTGCCCGGCC TCGAAATGCA GGGGCGCGTC ACACGGATCC GTGAACTCGG CGAGAACCGC CAGGGCGACA TTACCTACCG CGTCATCATC ACCCCGGCGC AACACAACCC TCGCCTGCGC TGGAATATGA CCGCTTCGGT TGCGATCGGT CAACCGTAA
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Protein sequence | MFWFSMKRTV MTAAALLALT ACGGQATAIQ PTPIPPVRAD ERVVAEARVV PARSAALAMN SSGVVADVLV SEGDTVQAQQ VLLVLDTRRQ EAIVAQAAAD KARAEATLAR LKAGPTEEEI VAAEAQVQRA EAQLQQVRGN VTDRDILAAE ARLQQARARL AELERASNRP EVVQAGARLE EARATLEAEK ARLSAAKTDA RLRMEQAVEA LTRAQSAWVV AKNEWDSVQA DGQHPTLGYG LNEAEKRKFY DAFVQAETAL RSAESSLEQA RIAYDAARQA EAAGVSAAGQ RVVEAQAAYD RIVRSTNNDE LAAARAEVAD AQARLERLRG EERAGAIAVA EATLAEARAN LARLKAGPTA AQIAEAEADV RRATAALQAA QTQLDELTLR APFGGLIAAV NIKPGEYVTP GTPLITIGDP GAWQIETTDL TELSIVKVQP DAPVTITFDA LPGLEMQGRV TRIRELGENR QGDITYRVII TPAQHNPRLR WNMTASVAIG QP
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