| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3212 |
|---|
| Symbol | |
|---|
| ID | 5210183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4049790 |
|---|
| End bp | 4050956 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640596804 |
|---|
| Product | cyclic nucleotide-binding protein |
|---|
| Protein accession | YP_001277523 |
|---|
| Protein GI | 148657318 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.868968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.113236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCAAAG GCTGGTTTCG ACGCAGAGCA ACCGTCACTG CCACACCGTC CAACAGCACC
TATCGGCATG GCAACGACAC GTTGATCGAA CTGCGCAACG TCACCAAAGT ATTCGAGACA
GCCGCAGGAC CCTTTACCGC CCTCGACAAC ATCACGCTCA ATGTAGACCG CGGTGAATTC
GTGGCGATCA TCGGCAAGTC GGGAAGCGGC AAATCCACTC TTATGAACAT GATCTCCGGG
ATCGACCGAC CCACATCGGG CGAAGTGTTC ATTGGCGATA CCGCTGTACA CACCCTGAAC
GAGAGTGAGA TGGCCGTCTG GCGCGGGCGC AACGTCGGGA TCGTGTTTCA GTTCTTCCAG
TTGTTGCCCG CGCTCTCACT GGTCGAGAAC GTGATGCTGC CGATGGACTT CTGCAACATG
TTCACGCCGC GCGAACGACG CGAACGGGCG ATGATGCTCC TCGATCAGGT CGGCATGGCC
GACCAGGCGC ATAAACTGCC ATCCGCCATA TCCGGCGGGC AGCAGCAACG AGTCGCCATT
GCCCGCGCCC TCGCCAACGA TCCGCCGATC ATTCTTGCCG ATGAGCCAAC TGGCAACCTC
GACTCGAAAA CGGCGCAACA GGTGTTCACC CTCTTCGAGA AGCTGGTCGA TCAGGGCAAA
ACGATCCTGA TGGTCACCCA CGACAGCGAT ATGGCGCGGC GTGTCAGTCG CGCTGTGATC
ATCGCCGACG GTCGGATCGT CAACGAATAC GTTGCACAGG CGCTCCCCGC CCTGACGCTC
GATCAACTGG GCTGGGTGAT GCGTCACGCC GACATCCGCA CGTATGCTCC CGGCGCTGTC
ATTATCGAGC AGGGCAGCCC GGCAGACAAC TTCTACATCA TTACCAGAGG GGACGTCGAG
GTGTTCATCG AACATCCCGA CGGCGGCGAA ATCATTGTCA ACCACCTGAG CACCGGTTCC
TACTTCGGCG AAATCGGTCT GCTGCACCAG GGGCGTCGCA CCGCTGGCGT GCGCGCCAGT
TTTGCGACCG GCTGCGATGC GGCAGTGCTC GATCAGCAGG AGTTCCACAC GTTACTGGCG
GAATCGGAAG CCACCAGGAA CGCCATTGAA CGGGTTGCGC GCGAACGTCA TTCACGAACG
CAGGCAGCAA CCCACGACGA CATGTAG
|
|---|
| Protein sequence | MFKGWFRRRA TVTATPSNST YRHGNDTLIE LRNVTKVFET AAGPFTALDN ITLNVDRGEF
VAIIGKSGSG KSTLMNMISG IDRPTSGEVF IGDTAVHTLN ESEMAVWRGR NVGIVFQFFQ
LLPALSLVEN VMLPMDFCNM FTPRERRERA MMLLDQVGMA DQAHKLPSAI SGGQQQRVAI
ARALANDPPI ILADEPTGNL DSKTAQQVFT LFEKLVDQGK TILMVTHDSD MARRVSRAVI
IADGRIVNEY VAQALPALTL DQLGWVMRHA DIRTYAPGAV IIEQGSPADN FYIITRGDVE
VFIEHPDGGE IIVNHLSTGS YFGEIGLLHQ GRRTAGVRAS FATGCDAAVL DQQEFHTLLA
ESEATRNAIE RVARERHSRT QAATHDDM
|
|---|
| |