| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3177 |
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| Symbol | |
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| ID | 5210148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4000107 |
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| End bp | 4001753 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640596769 |
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| Product | spermidine synthase-like protein |
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| Protein accession | YP_001277488 |
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| Protein GI | 148657283 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG AGGTCATCGT CACATCGTCA GAAATCTCTC GGACGACGTC CCATTCTGCA
CGTGTGTTGC TCAGCACCGT CTTCCTGTGC GGTGTCGGCA CGTTGGGCGT CGAGATGATC
GCCTCACGCC TGCTTGCCCC CTATTTCGGC ACGTCGCAGC CGATCTGGGC TGCAATTATC
GGTCTGACGC TGGTCTACCT GGCAGTCGGG TATCACTTCG GCGGGCGCCT GGCTGACCGT
CATCCTGACG AGCGGGTCCT GTACCGTATT GTTCTGCTAT CGGGAGTTGC GACGGCGCTG
ATCCCGCTCC TTGCCGCCCC CATTCTTGGT TTCGCGCAAC GCGCCGTCGC CGAACTCGCG
GTTGGCGGCT TCATCGGCGC GCTGTTTGGC GTGCTGGCGT TGTTCGCTGT GCCGGTCACG
TTGCTGGCAA TGGTCGGACC ATTTGCAGTG CGTTTGCAGT TGCACCGCGC GGCAGCCGGC
GTGCAGGTTG CCGGCGCTGC CGCCGGAACG GTCTCTGCCA TCTCGACCGT TGGCTCAATC
GTGGGGACAT TCCTCACCGT TCTGGTGCTT ATTCCCGCAA TTGGCACCAC AGCCACGACG
TATGTCTACG CTGGTTTGTT GACCGTACTC GGCGCGGTTG GTGTGCGCAA CTGGAAGGCG
CTGGCGGCGC TGGCGCTCAC AGCAGCGCTC TCAGGGTATG TGCTTTTCAC GGCGGGACCG
GTGAAGGAAG CCGGATGTGC CGGATGCACC CTGATCGCTG AATACGAATC GCCCTACAAT
TACATTCAGG TTGCGACGCG CCGCGACCCG GAGTATGGGC AGCAGGTCGT GCTGCTGCTG
AACGAAGGTC TGGCGATCCA TTCGATCTAC AACACCGCCT ACGATGGCGA TCCGCTTGAT
ACACTCACCG GCGGCGGACC ATGGGACTAC TTTGCGATTG CGCCGTTTGT TGTACCGGGG
CGTGATCCGA CGACGGTGCG TAGCCTGGCA ATGCTTGGCT CAGCGGCGGG AACGACGCCA
GCGCAGTTTC TGGCGATCTA CGGACCTGAG ACGCGCATCG ATGCAGTCGA GATCGATCCC
AAAATCATCG AAGTGGGACG ACGCTTCTTC AACATGCGCG ATGCCTCAAC CGGTCCAGAG
CATCCGAATT ACCACGTCTA CGCCGAAGAC GCGCGCTTCT GGCTGGCGAC GCAGGGCGGC
GTCTACGATG TCATCGGCAT GGATGCCTAT CACCAACCCT ACATCCCCTT CCATCTGACG
ACGGTCGAGT TTTTTCAACT GGTGCAACAC CATCTTGCTC CCGATGGCGT GGCAGTCGTC
AATGCCGGGC TGGGTCCCAA TGGCGACGAC CGCCTGAGTC AGGCGATTGT TGCGACCATG
GAGCAGGTTT TTCCTCAGGT TTTTGTGATC GAAACGGCGC GTCTCAGTAA TCAGATCATC
ATTGGCGTGA ATCGCAACGT CGGCGATGGA TACGCCAATC TGCTCGATGC ATATGAGCGT
CTCGAACATC CGGCATTGCG GCGCACCCTT GAACGGGTGT ATATTCCAAC GCGCCAATCT
ACGGCAACCT TCGCGCCTTT CACCGATGAT CGCGCACCGG TTGAGCGTCT GGTCGATCTC
CTGATTTTTG ATACGTTGAT ACGTTAG
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| Protein sequence | MNQEVIVTSS EISRTTSHSA RVLLSTVFLC GVGTLGVEMI ASRLLAPYFG TSQPIWAAII
GLTLVYLAVG YHFGGRLADR HPDERVLYRI VLLSGVATAL IPLLAAPILG FAQRAVAELA
VGGFIGALFG VLALFAVPVT LLAMVGPFAV RLQLHRAAAG VQVAGAAAGT VSAISTVGSI
VGTFLTVLVL IPAIGTTATT YVYAGLLTVL GAVGVRNWKA LAALALTAAL SGYVLFTAGP
VKEAGCAGCT LIAEYESPYN YIQVATRRDP EYGQQVVLLL NEGLAIHSIY NTAYDGDPLD
TLTGGGPWDY FAIAPFVVPG RDPTTVRSLA MLGSAAGTTP AQFLAIYGPE TRIDAVEIDP
KIIEVGRRFF NMRDASTGPE HPNYHVYAED ARFWLATQGG VYDVIGMDAY HQPYIPFHLT
TVEFFQLVQH HLAPDGVAVV NAGLGPNGDD RLSQAIVATM EQVFPQVFVI ETARLSNQII
IGVNRNVGDG YANLLDAYER LEHPALRRTL ERVYIPTRQS TATFAPFTDD RAPVERLVDL
LIFDTLIR
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