| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3161 |
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| Symbol | trmE |
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| ID | 5210131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 3981263 |
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| End bp | 3982678 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640596752 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001277472 |
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| Protein GI | 148657267 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.258894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCCG GGGCAACCCG GTTCTGTCGT ATGCTGTATG ACGACACAAT TGCAGCCATT
GCGACGCCGC CCGGCGAGGG TGGCATTGGA ATTGTGCGCA TAAGCGGAAG AGATGCGTTG
AAGATCCTGG AGCGCATCTT CGTGCCGGTG CGACCTGGTC GGTGGAAACC CTACCAGATG
CGTTATGGTC GTGTGGTTGA CCAGAACGGC GCAGTCGTGG ACGAGGCGCT GGCAGTGTTC
ATGCGCGGTC CACGAAGCTT CACTGCTGAA GACACTGCCG AAATATCAGT TCACGGAGGA
CCGCTGGTTG TCGAGCGGGT GCTGCAACAG GCGCTGGCGG CTGGCGCGCG GGCGGCCGCT
CCCGGCGAGT TCACCATGCG CGCTTTCTTG AATGGGCGGA TCGATCTTGC TCAGGCAGAA
GCAACGCTTG ACATAATCAC AGCGCGAACG ACGACAGCGC TGGCGCTGGC AGAGGCGCAG
TTGGGCGGAT GGCTCTCGCA GGAACTGCAC CGCATCCGTG ACCTGTTGAT GGACCCGCTG
GCATACTGCA CAGCACTGGT CGATTTTCCT GAAGACGAAG TCGATCCGCA GGACATCGAG
ACTCCCCTGA CGGCGGCAGT TCAGGCGCTC GATGCGCTGG TTGCGTCAGC GCAGCACGGG
ATCATCTATC GCCAGGGCGC ACGCGCTGCG TTGATCGGGC GTCCGAATGC CGGAAAGTCG
AGCCTGTTGA ACGCACTGCT GCGCGTTGAT CGGGCGATTG TGACGCCGAT CCCCGGCACG
ACGCGCGATA CGCTTGAGGA AACCGCCAGT CTGGGAGGCG TGCCTGTGGT GTTGACGGAC
ACCGCAGGGA TCGTGGAAAG TGACGATCCG GTCGAGCGTC TTGGCGTGGC ACGGAGTCGT
CAGGCGGTGA GGCTGGCAGA CCTGGCGCTG CTGGTCGTTG ATGTGTCACT CCCGGTTGCT
GACGATGACC GCGAGATTGT CGCGTTGACC GAAGAGAAAC GCACGATCCT CACGCTCAAC
AAAATCGACC TGATCGACGC CGATCGGTCG ATCATCGCAG CGCGGCAGCG TGAATATGAA
CAGATCCGCG GCAAGGCATT CGACGCGATG GTGACCGTCT CAGCATTAAC CGGACAGGGT
CTCGACGAAC TCGGCGCAAC GGTGGCGCGT CTGTTGCTGG GTGCGCCAAT AGCGGCGGAT
GGGCGTCTGG TGACCAATGC ACGCCATCGT GATGCACTGG CGCGCGCAGC GGATCATGCG
CGCGACGCGC TTACCGGTTT CCAGCAGGGT GTCTCTCCCG ATCTGCTGGC GGTTGACCTG
ACAGCGGCGA TCAACGCTAT CGGCGAAGTG ACCGGCGAGT CGGTCGGCGA GGACCTGCTG
CATGCCATCT TCAGCCGGTT TTGTATCGGG AAGTGA
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| Protein sequence | MPAGATRFCR MLYDDTIAAI ATPPGEGGIG IVRISGRDAL KILERIFVPV RPGRWKPYQM
RYGRVVDQNG AVVDEALAVF MRGPRSFTAE DTAEISVHGG PLVVERVLQQ ALAAGARAAA
PGEFTMRAFL NGRIDLAQAE ATLDIITART TTALALAEAQ LGGWLSQELH RIRDLLMDPL
AYCTALVDFP EDEVDPQDIE TPLTAAVQAL DALVASAQHG IIYRQGARAA LIGRPNAGKS
SLLNALLRVD RAIVTPIPGT TRDTLEETAS LGGVPVVLTD TAGIVESDDP VERLGVARSR
QAVRLADLAL LVVDVSLPVA DDDREIVALT EEKRTILTLN KIDLIDADRS IIAARQREYE
QIRGKAFDAM VTVSALTGQG LDELGATVAR LLLGAPIAAD GRLVTNARHR DALARAADHA
RDALTGFQQG VSPDLLAVDL TAAINAIGEV TGESVGEDLL HAIFSRFCIG K
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