Gene RoseRS_3153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3153 
Symbol 
ID5210123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp3967393 
End bp3968361 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content59% 
IMG OID640596744 
ProductAllergen V5/Tpx-1 family protein 
Protein accessionYP_001277464 
Protein GI148657259 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAATCC GATGTCTCCG CATTATAAGC TTTCTGATTT GCCTCAGTCT TATTCTCTTT 
GTTCTCAACG CTCCGCCATT GACACAATCA CTTCTTGCGC AAACTGACCC GATACAACGG
GTTATTGAGC TGACAAACGA GGTACGGATG GCTAATGGCC TGTCGCCGCT GAAACGCAAC
GACATCCTGC AGCAGGCAGC GGTCTACATC GTGGAGGACA ACGCCAGCCG GAATACCCTG
TCGCACACCG ACGGTCTTGG GCGCGATATG GGGCGGCGCT TTCAGGATTT TGGCTATGCC
TATTCCATAG CCGCTGAGAA CCTGGCAGGC GGTTATGCCT CTCCTGAGAC CGCTATCGAG
GGTTGGATGA ATAGCTCCGG TCATCGAGCG AATATCCTAC GGACTGGCTT GTGCGAAATT
GGCGTTGGTT ACACCTACCG GAGCGGCACG ACCTACGGCC ATTTCTGGTC GCAGACCTTC
GGCTGCCGCT GGAATACCTA CCCGGTGGTG ATCAACGGCG AGGCGGCCGT CACGACTTCG
CCGACGGTGA ACCTGTACAT TTATGGTGCG GGGTGGGCAG AGCAGATGCG GCTGAGCAAT
GATAGAGTCA ACTGGACGGA ATGGCAACCA TATGCCACCA ATTCCACCTG GACGCTGGCG
ACAGGAAACG GGGAGCGCAC CGTTTTCGTG CAAATTCGGC GCGGGACGAC CATCCACGAG
GCAAGCGATA CGATCGTGGT GCAGCAAACA AACAACAATA CCGCCACCCC AACCCCATCG
GTCACCCCCT CCTCGACCCC GACGCGTACA CCGACCCTGA CCCCATCGGT CACGCCCTCT
CTGACCCCAT CACGCACCCC CTCCCCGACC CCGACGCGCA CACCCTCCTT ATCGCCGTCG
GTCACACCCA CCATACCGCT GATGCTGCCG TCACCGCGGC AGGTGTACCT GCCGCTGGTG
GTGCGGTGA
 
Protein sequence
MSIRCLRIIS FLICLSLILF VLNAPPLTQS LLAQTDPIQR VIELTNEVRM ANGLSPLKRN 
DILQQAAVYI VEDNASRNTL SHTDGLGRDM GRRFQDFGYA YSIAAENLAG GYASPETAIE
GWMNSSGHRA NILRTGLCEI GVGYTYRSGT TYGHFWSQTF GCRWNTYPVV INGEAAVTTS
PTVNLYIYGA GWAEQMRLSN DRVNWTEWQP YATNSTWTLA TGNGERTVFV QIRRGTTIHE
ASDTIVVQQT NNNTATPTPS VTPSSTPTRT PTLTPSVTPS LTPSRTPSPT PTRTPSLSPS
VTPTIPLMLP SPRQVYLPLV VR