| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3114 |
|---|
| Symbol | |
|---|
| ID | 5210083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3912204 |
|---|
| End bp | 3913253 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640596706 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001277427 |
|---|
| Protein GI | 148657222 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000106711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00595378 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGAA CAATGCATGA GCAGCATCCG TGGGATGAAC TTGACGAGCG CCAGGAGATC
GCCGGTGAGG GCGAGATGGC GCCGATTGCA GATATTGAGG AACTTGCAGC CGAGAATCTG
GAGGAGACGC TGGAGTCGGA TTCGACCCTG GATTCGATCC AGCACTACCT GCAGGAGATC
GGGCGGGTTC CGTTGTTGAC AGCTGCCGAG GAGGTCGAAC TTGCCGAGCG CATGGAGCGC
GGCGCTGCCG CCGCGCGGCG GCTGGCGTCG GCAGAGGATC TCAGCCCGCA GCTGCGTCAG
GCGCTGCTCG ATGATGTCGC TGCCGGGCAG GAAGCGCGCC GACATTTGAT CCAGGCGAAC
CTGCGTCTGG TGGTGAGCAT TGCCAAAAAG TATGTCGGGC GCGGTCTCTC GCTGCTCGAC
CTGATCCAGG AAGGCAACAT CGGTCTGATG CGCGCCGTTG AGAAGTTCGA CCACCGCAAA
GGCAACCGCT TCTCAACGTA TGCGACCTGG TGGATCCGTC AGGCGGTGAC ACGCGCTATC
GCCGAGCAGG GGCGCACCAT TCGCCTGCCG GTGCATATGA GCGAGTCGGT CGGTCAGGTG
AAGCGCGCCG CCGACCGCCT GGCGCAGGTG CTGGAGCGGC AGCCGACGCC GGAAGAGATT
GCGACGGCGC TCGGTCAGCC GACTGAGCGT ATCGAGCGGG TGCTCGAGGC GTCGCGTCGT
CCGGTGTCGC TGGAAATGCC GGTCGGCGAG GATGGGGAGC ATACGCTCGG TGATTTCTTG
CAGGATAGCG ATCTGCCGAC GCCGGTCGAA GCAGCGTCGC ACCAGTTGCT CCGGCGTGAT
CTTGCCGCAG CGCTCGACCG CCTGAATGAG CGCGAGCGAC GGATCATTGA TCTGCGCTAC
GGTCTGGTGG ACGGGCAGCG CCGCACGCTC GAAGAGGTCG GGCGGGTGCT GGGGATGACC
CGCGAGCGCG CGCGCCAGAT CGAGGCGGAG GCGTTGCGTC GCCTGCGCGC TCCTGACGTC
GGTCTCCATC TGCGCGATTA CCTGGAGTAG
|
|---|
| Protein sequence | MSRTMHEQHP WDELDERQEI AGEGEMAPIA DIEELAAENL EETLESDSTL DSIQHYLQEI
GRVPLLTAAE EVELAERMER GAAAARRLAS AEDLSPQLRQ ALLDDVAAGQ EARRHLIQAN
LRLVVSIAKK YVGRGLSLLD LIQEGNIGLM RAVEKFDHRK GNRFSTYATW WIRQAVTRAI
AEQGRTIRLP VHMSESVGQV KRAADRLAQV LERQPTPEEI ATALGQPTER IERVLEASRR
PVSLEMPVGE DGEHTLGDFL QDSDLPTPVE AASHQLLRRD LAAALDRLNE RERRIIDLRY
GLVDGQRRTL EEVGRVLGMT RERARQIEAE ALRRLRAPDV GLHLRDYLE
|
|---|
| |