Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3061 |
Symbol | |
ID | 5210029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 3844457 |
End bp | 3846571 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640596653 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_001277375 |
Protein GI | 148657170 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.352611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00632845 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGGCTC ACTTCCTGCG CAGGTTCGCA CAACCGCCGC ACTTCGATGA TGAAGAGCAA ACGCGCATCG CACGGACGCA GCATCTCCTG CTCGTCGTCT GTCTGACGAT TGCGCTGGTT GCTTCCGGAG TCAATGCGTT ACTCCAGCGA CCCGTTCCAA CCGCTGCCCT CCTGGCATGC AGCGGATTCT TGCTCATTTC CTTTCTGTTG CTCCACGCAC GTCGGGTGCG TCTGTCGATT ATCGTCCTTT TGGGGACGAT CATCATGCTC ACTGCCTCAT TGCAGGTCAT CGGTCGCGGT GCGCACGATA CGGTCACCAG TCTCTACGCC ACGATGATCG TCATCGGCAG CCTGCTCCTT GACCGGCGGT CATTCATTGG ACTGGTTGCG GCGACGCTGC TGGTGATTGC GGGGGTTGTG ACTGCCGAAG CGCGCGGATT AACCAGATCT CCCTATGAGG GCGATTTCGG CGACTGGTTC GATCTTGCGC TCATTCTGGG GTTGACGGCG TTCACGTCAC GGTTGCTGAG CGAGAGTCTG GAGCGCAGCC GCGCCCACGC CCGCGCCAAT GAACAGGCGC TGGCACAGCA GACGGAAGCG TTGCGCCTCT CCGAGGAGCG CTATCGCATT CTGGCAGCCA ACCTGCCCGA TAGCGCCGTG CTGATCTTCG ACCACGACCT GCGCTACGTG CTCGCCGATG GACCGGAACT CGCCGCAACC GGGTATCTCA AGGAGAAGAT CGAGGGCCGC ACCCTGTGTG AGGTCGTTTC ATCCGCGTTT GCGGAACAGG TTGAAGGCAA CCTCCGCGCT GTCTTGAGCG GCAGGTGCTT TTCGGCAGAA TTGCCGTATG GTGATCGCAT CTACGCATAC TACTACATTC CGCTGGTCGA CGACCGTGGT ATGGTAAAGT ATGCGATGGT CCTGGCGCGC AACGTGACTG CGCAGCGTCA GGCAGAGGCG GATCTGCGGG CAAGCGAGGC GCAACTGCGC ATGCTCGCCG AGAATATGGG CGATGCGATT GTGCAACTGG ATTCGCATCT CAATGTTGTG TATGTCAGCC CTTCGGTGCG GCGCGTTCTG GGATGTGAGC CGGAAGATGT TGCAGGGAAA CAGATAGCGG CGCTTGTGTC CCCTGATGAT GCGCCCGCTG TGATGGCAGC CATTGAAGAA GCGCGAGAGT CGGGCGCTGC TGCCATCCGG GTTGAGTACC GTTTTCGTAA TCATCAGCAG ATGTGCATCT GGCTCGAAGC TGAAGTTCGT CTGCTCTACG ATGCACACCA GCACTTTGAA GGCGCCATTC TCAGCATGCG CGATGTCACC CGGCGCAAAG AGGTCGAGGC GGAACGGGAG CGCCTGATCG CCGAACTTGA GCAAAAGAAC GCCGAACTTG AACGTTTCAC CTACACCGTA TCACACGACC TGAAAAGTCC TCTGATCACT ATTCAGGGGT TCCTCGGCTA TCTGGAGCAG GACATTCGGA ACGGCGACAC GGACCGGGCG TTGAGCGACA TCCGGCGTAT CAGCGCAGCG GCGCGCCGGA TGGAGCATTT GCTGCAAGAT CTGCTGGAAC TGTCGCGCAT CGGGCGGGTC AGCGCTGAAC CGCAAACCGT ACCGTTCAAC ATGATCGTAC AGGAAGCGCT TGAACTGATC GCCGGGAGAA TCGCAGAACG GCAGGCGCGG ATCACGGTTG CGCCGGATAT GCCGCTCGTT CACGGCGATC GACGGCGTCT GGCGGAGGTG GTGCAGAACC TGGTTGATAA CGCGATTAAG TTCTGCGATA ATCAGACTGT GCCAGAGATC GAGATCGGTG TGCACGCCGT GGCAAGCAAC GAAGCAATCT TCTTTGTGCG TGACAATGGC GTGGGCATCG ACCCAAGGTA CCACGATCAG ATCTTTGGTC TGTTCAACAA ACTCGATCCG CAGAGTGAAG GAACAGGCGT CGGCTTAACG ATTGTGCGGC GGATCATCGA AGTGCATGGC GGGCGTGTCT GGGTCGAGTC GGCTGGGCGG GGCGCTGGCG CAACCTTCTT TTTCTCGCTT CCCACGATCC ATACACAGCA GCACGGAGTG AGTCATGACC GACAGCGCAT TCAGAGTATT GCTGGTGGAA GATAA
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Protein sequence | MTAHFLRRFA QPPHFDDEEQ TRIARTQHLL LVVCLTIALV ASGVNALLQR PVPTAALLAC SGFLLISFLL LHARRVRLSI IVLLGTIIML TASLQVIGRG AHDTVTSLYA TMIVIGSLLL DRRSFIGLVA ATLLVIAGVV TAEARGLTRS PYEGDFGDWF DLALILGLTA FTSRLLSESL ERSRAHARAN EQALAQQTEA LRLSEERYRI LAANLPDSAV LIFDHDLRYV LADGPELAAT GYLKEKIEGR TLCEVVSSAF AEQVEGNLRA VLSGRCFSAE LPYGDRIYAY YYIPLVDDRG MVKYAMVLAR NVTAQRQAEA DLRASEAQLR MLAENMGDAI VQLDSHLNVV YVSPSVRRVL GCEPEDVAGK QIAALVSPDD APAVMAAIEE ARESGAAAIR VEYRFRNHQQ MCIWLEAEVR LLYDAHQHFE GAILSMRDVT RRKEVEAERE RLIAELEQKN AELERFTYTV SHDLKSPLIT IQGFLGYLEQ DIRNGDTDRA LSDIRRISAA ARRMEHLLQD LLELSRIGRV SAEPQTVPFN MIVQEALELI AGRIAERQAR ITVAPDMPLV HGDRRRLAEV VQNLVDNAIK FCDNQTVPEI EIGVHAVASN EAIFFVRDNG VGIDPRYHDQ IFGLFNKLDP QSEGTGVGLT IVRRIIEVHG GRVWVESAGR GAGATFFFSL PTIHTQQHGV SHDRQRIQSI AGGR
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