| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2998 |
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| Symbol | |
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| ID | 5209966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 3762199 |
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| End bp | 3763884 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640596590 |
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| Product | proton-translocating NADH-quinone oxidoreductase, chain M |
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| Protein accession | YP_001277312 |
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| Protein GI | 148657107 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
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| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00848252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.769914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATACC TGGCATACGC ATCGACGCCA TGGCTGACGC TGCTGATCCT GTCACCCCTG
GTCGGGCTGG CGCTGACGGC GCTGGCAGGC GCGCTGCGCC TCGATGATCG CACAGCCATG
ATCGGCGCAA CGGCGTGGTC TACCGTCCCC CTTGCTCTGG CAATTATCGT CTGGGTCGGG
TTCAACCCGA ACGCCACCGC CGATGGGCAG GGGGTCGTGC AATTCGTCGA GAAGATTCCG
TGGGTGCAGG CGATCCGGGT CGATTATTTC GTTGGGGTGG ACGGCATCAG TATGCCGCTG
GTGATCCTGA CGGCGGCGAT GACGCCGGTG GCGATGCTGG CGTCGTTCAG CGTCACACAG
CGGGTGAAAC TGTACCTGGC GCTGATGTTT CTGCTGGAAA CGGCAATGCT GGGGTACTTC
CTGGCGCTCA ATTTCTTCTT CTTCTTCATC TTCTGGGAAT TCAGCCTGGT TCCGGCATAT
TTTCTCATTC AAGGATGGGG ACGCCGCCAC ACCACTGATG CCGACCCGGA ACAGCGCCGC
CGCGATGCCG CACTGAAGTT CTTCGTCTAT ACCATGGCCG GTTCGATCGG CATGCTCCTC
CTGTTTCAGT TCTTCTATGT CGCCACCGCC GCCGCCGGTA TTCCAACGTT CGATCTGATC
ACGCTGGCGC GATTGGGGCA GGGGTTGACG GTCGAACGCG CGGCGCTCGA TCCGGTGAAC
CTGACGTTGC AAGAGATTAT CTTCAATTAT GTCGAGCAAC TCGGAATTGC CGATGTGCTT
GGGCGTTACC CGTTGCTCTA CACATCGATT GCGTTCTGGG CGATTTTTAT CGCCTTTGCG
ATCAAACTCG GCATCTGGCC CTTCCACACC TGGCTGCCGG ACGCCTATAG CGAAGCGCCG
CCAGCGGCGT CCATCCTGTT GGCGGCGGTG ATGTCGAAAA TGGGCGCCTA CGGCATGCTG
CGCCTGATGC TTCCCCTGGT TCCCGACGCG GCGCAGTATT TTGGTCCGGC AATCGGCGCG
CTGGCGCTGA TCGGCGTTGT GGCTGGCGCC TTCGGCGCAC TCGGTCAGGT CGGCGGCGAC
CTCAAGCGCC TGATCGCGTA CACCTCGGTC AACCACATGG GGTACGTCGG TCTGGCAATT
GCCGCAGCTG CGACCGTCGG CGCGGCGGAT GTCGCCACCC GTGCAACGGC GATCAATGGC
GCGTTGTTCC AGATGGTTGC GCACGGTCTC TCAACCGGCG CGCTCTTCCT GATGGCGGGC
ATGCTTGCCG AACGCACCGG CTCCGACGAC ATGCGCTCGC TCGCCGGGTT GCGCACAACG
ATGCCGGTCT TTGCCGGTGC AATGGGCGTG GCGACCTTCG CCAACCTGGG GTTGCCCGGT
CTTGCCGGGT TCGTCGGCGA GTTCTTCATC TTCCGCGGCG TCTGGGCATC GCTGCCGCTC
TTCGCGCTGC TGGCGACCAT CGGGCTGGTT GTGACCGCGC TGGCGCTGCT GCGCATGTAT
GGGCAGATGT TCCATGGGCA GACGAACGAA CGCAGCGCTA TGCCCGACAT GCGTCTCGCC
GGACGCGAGT TCCTGGCAGT TGCACCGCTG CTGATCGCGC TGCTGATCCT TGGCATCTAC
CCGGCGCCGA TCATGGACCT GTCGAACCAG ACGGCAACCG CGCTGGCGAG AGTATTCCTG
CCGTGA
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| Protein sequence | MTYLAYASTP WLTLLILSPL VGLALTALAG ALRLDDRTAM IGATAWSTVP LALAIIVWVG
FNPNATADGQ GVVQFVEKIP WVQAIRVDYF VGVDGISMPL VILTAAMTPV AMLASFSVTQ
RVKLYLALMF LLETAMLGYF LALNFFFFFI FWEFSLVPAY FLIQGWGRRH TTDADPEQRR
RDAALKFFVY TMAGSIGMLL LFQFFYVATA AAGIPTFDLI TLARLGQGLT VERAALDPVN
LTLQEIIFNY VEQLGIADVL GRYPLLYTSI AFWAIFIAFA IKLGIWPFHT WLPDAYSEAP
PAASILLAAV MSKMGAYGML RLMLPLVPDA AQYFGPAIGA LALIGVVAGA FGALGQVGGD
LKRLIAYTSV NHMGYVGLAI AAAATVGAAD VATRATAING ALFQMVAHGL STGALFLMAG
MLAERTGSDD MRSLAGLRTT MPVFAGAMGV ATFANLGLPG LAGFVGEFFI FRGVWASLPL
FALLATIGLV VTALALLRMY GQMFHGQTNE RSAMPDMRLA GREFLAVAPL LIALLILGIY
PAPIMDLSNQ TATALARVFL P
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