Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2970 |
Symbol | |
ID | 5209938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 3719151 |
End bp | 3721574 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640596562 |
Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding |
Protein accession | YP_001277284 |
Protein GI | 148657079 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.135191 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGA TCAAGAAAGT GGCCGTCATT GGCGCCGGTA CGATGGGAGG CGGCATCGCC GCCCACTGCA TCAATGCCGG TTTGCAGGTC GTGCTGCTCG ATACGGTTCC GTCCAGCCTG ACCCCCGAAG AAGAAAAACG CGGTCTGACG CTCGAGTCGA AGGAGGTGCG CAATCGCTTC GTCCGGGCAG GTCTGGAGCG GATCAAAAAC GCTCGCCCGG CAGCGCTCTT CGATCCGCAG TCGATCTCCC GGATCGTGAC CGGTAATGTG GAGGACGACC TCGCCTTGAT CGCGGATGCC GACTGGATCG TCGAGGCGAT TATCGAGCAA CTCGAACCAA AACGCGCGTT GATGGAAAAG ATCGAGCAGG TGCGCAAGCC GGGCAGCATC GTTTCATCCA ATACGTCCGG CATCCCGATC GCCGCCATTG CAGCCGGTCG ATCCGACGAT TTTCGCAGGC ATTTCCTGGG AACGCACTTC TTCAACCCGC CGCGCTATCT CTACCTCCTC GAAGTCATTC CAACGCCCGA CACTGACCCG CAGGTCGTTG CAGCGATCAG CCGCTTCGCC GATGTGACGC TTGGCAAAGG CGTGGTGATC TGCAAGGATC GCCCCAACTT TATCGGCAAC CGCATCTTCA GTTACGATAT TGCCACCACG GTGGGGTATG CGCTGCGCAA TGGCTACAGC GTCGAAGAGG TCGATGCCCT GACGGGTGAA TTGATCGGCA GACCGAAAAC GGCAACCTTC CGCCTCCTCG ATCTTGTCGG CATCGATGTG ATGCTGCATG TGCAACGCAA TCTGTATGCG GCGCTTCCCG ACGACGAGGA GCGTGAGGCG CTGAAGATCG CGCCTGAAAT CGAGGCGATC GCCGCCAGAG GATGGCTGGG GAACAAGAGC GGCATCGGTT TCTACAAAGA AACGAAAGGT GCATCCGGGC GCGAGTTCTG GCCCCTCAAT CTGCAAACGA TGGAGCATGA ACCGCCGAAG AAGCCGCGCT TCGATCTGGT CGGCAAGGCG CGCAAGATTG AGGACCTCCA TGAGCGGTTG CGCTTCCTGT TCGACAATGC CGATACCGAC CGCGCTGGCG TCTTTATCCG CGAAACCATG CTGCGTATGC TGGCGTACAC AGCGCGACGC ATCCCGGAGA TCTCTGAGAG CATCGTCGAT ATCGACCGCG CCATGCGCTG GGGGTTCAGC CATCAACTTG GTCCTTTCGA GGTGTGGGAC ACCCTCGGGG TGCGGAAGAC AGTCGAGCGC ATGCGTGAAC GCGACATAGC GATTGCACCA TGGGTCGAAG ACATGCTGGC GAAGGGCGGC GAGAGTTTCT ATCGCCGCGA GAATGGCCGG ATCGTCAGCG TGTGGAGCCC GATAGACGCG CAGTATGTCG CATACACGCC GCCGGAAGGG GTGCTGTCGC TCGACGACCT GCGCGCCCAG GGGAAAGAAG TCGCGCGCAA CCATAGTGCA TCGCTTATCG ACCTGGGAGA TGGCGTGCTC TGCTTTGAGT TCCACGCCAA GGTGAATGCC ATCGATCCGC TGATCACCGA GATGGGGTGG AAAGCGCTTG AGCTGCTCCA GGAGGATCGC TGGGTCGGCA TGGTGATCGG CAATCAGTCG TCCGATTTTT GCGCTGGCGT GAACCTGGGG GTCGTGCTGA TGGGGGTAAT GGGCGGCAAA CCCGAAGAGT CGGCGAAGTT CGCCAAAGGA ACGCAGGACC TCTTCTTCCG CTTCCGCACC TGTCCAAAAC CAATCGTGGC TGCGCCGTAT GGCCGCGTGC TCGGCGGCGG CGTCGAAGTC TGCCTGGCAG CGGCGCGACG GGTGGCAGCC GCTGAGACAT ATATGGGTCT GGTGGAACTG GGGGTGGGCC TGATCCCCGC CTGGGGCGGG TGCAAGGAGT TTGTTCGCCG GCACGTCTCG CCGCATGTCA GAACGCCTGG CGCTGATCCG CTTCCCTATC TGCAACAGGC GTTCGAGACG ATTGCGATGG CGAAGGTCAG TGAGCTGGGC GCCGTTCAGG CGAAGCAACT CGGCTACCTG ATGGACGACG ACAAGATCGT GATGAACCGC GAGCGGCTGA TCGCCGAAGC AAAGAAGGAA GTGCTGCTGA TGGTCGCCGA GGGGTATACG CCGGTTCCGC CGGAGGGTGA GCCGGTGTAT GCTATCGGGC GGCGCGGCAT CGCAGCCGTG AATGCCATGG TCTACGGCAT GCGCCAGGGC GGCTACATCA GCGATTACGA TATGAAACTG GCGCGCGCGC TGGCGTATGT GATGTGCGGC GGCGACCTGA CCCAGCCACA GTGGGTCACC GAGCAGTATT TCCTTGACCT GGAGTTCGAG CAGGCAAGCC AGTTGATCCA GCAACCGAAG ACCCAGGAGC GGATCATGGC GATCCTGCAA ACCGGCAAGC CGTTGCGGAA TTGA
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Protein sequence | MTQIKKVAVI GAGTMGGGIA AHCINAGLQV VLLDTVPSSL TPEEEKRGLT LESKEVRNRF VRAGLERIKN ARPAALFDPQ SISRIVTGNV EDDLALIADA DWIVEAIIEQ LEPKRALMEK IEQVRKPGSI VSSNTSGIPI AAIAAGRSDD FRRHFLGTHF FNPPRYLYLL EVIPTPDTDP QVVAAISRFA DVTLGKGVVI CKDRPNFIGN RIFSYDIATT VGYALRNGYS VEEVDALTGE LIGRPKTATF RLLDLVGIDV MLHVQRNLYA ALPDDEEREA LKIAPEIEAI AARGWLGNKS GIGFYKETKG ASGREFWPLN LQTMEHEPPK KPRFDLVGKA RKIEDLHERL RFLFDNADTD RAGVFIRETM LRMLAYTARR IPEISESIVD IDRAMRWGFS HQLGPFEVWD TLGVRKTVER MRERDIAIAP WVEDMLAKGG ESFYRRENGR IVSVWSPIDA QYVAYTPPEG VLSLDDLRAQ GKEVARNHSA SLIDLGDGVL CFEFHAKVNA IDPLITEMGW KALELLQEDR WVGMVIGNQS SDFCAGVNLG VVLMGVMGGK PEESAKFAKG TQDLFFRFRT CPKPIVAAPY GRVLGGGVEV CLAAARRVAA AETYMGLVEL GVGLIPAWGG CKEFVRRHVS PHVRTPGADP LPYLQQAFET IAMAKVSELG AVQAKQLGYL MDDDKIVMNR ERLIAEAKKE VLLMVAEGYT PVPPEGEPVY AIGRRGIAAV NAMVYGMRQG GYISDYDMKL ARALAYVMCG GDLTQPQWVT EQYFLDLEFE QASQLIQQPK TQERIMAILQ TGKPLRN
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