| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2871 |
|---|
| Symbol | |
|---|
| ID | 5209840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 3586063 |
|---|
| End bp | 3588645 |
|---|
| Gene Length | 2583 bp |
|---|
| Protein Length | 860 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640596467 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_001277189 |
|---|
| Protein GI | 148656984 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C
[TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCGGT TCGGCTCAAA ACGGTTGCGC AGCGTGGCTG CAATTGTCGC GCGTTGCACC
GGCATCTGCG TCCTCGCGCT GGCGCTCCTC GTCGCCTGGT TGTGGATGTC GACCGATCTG
CCTTCCCGTG AGCGGTTGCG TGAACGTGCC GCCCTCGATG CGACACGGGT GCTGGACCGC
AACGGTCGTC TGCTCTACGC CGTGCCTGAT CCGCTGGGTG CGCAACGTTC TCACGTGTCG
CTTGGCGACA TTTCGCCAGC GCTGATTCAG GCGACGATTG CGGTCGAAGA CGCTGGTTTC
TACGCCAATC CGGGGATCGA CCTGCGGGGC ATCGCACGCG CAATCTGGCT CAATCTGCAG
CAGGGTCGGA TTGTCGCTGG CGGCTCCACG ATCACACAGC AACTGGCGCG TTCGTTTCTG
CTCGATCCGT CGCTGGCGCA GGAGCAGACA CTGGAGCGCA AGGCGCGCGA GATGATACTG
GCGCTCAAAC TGACCGCGAC GCTTCCCAAG GACGACATCC TGGAAATGTA CCTCAATCAG
ACCTATTATG GCGCGATGAG TTACGGCGTC GAGGCGGCAT CACAGCGGTT CTTCGGCAAA
CCTGCGCGCG ACCTCGATCT CGCCGAAGCA GCCTTGATCG CCGGTTTGCC GCAGGCGCCG
TCGCGCTATA ATCCGTTGAT CAACCCAGAC GCAGCGCGCG CCCGTCAACG CGATGTGCTG
GTGGCGATGG TGCGCGTCGG TTTCATCACG CCAGCAGAGG CGGAGATTGC CGCCAATGAA
CCATTACGCT TCAGCGCCGG ATGCGATACT CCCGGATGCC TGCCGCGCGC GCCGCATTTC
GTCTTCTTCG TTCTGGAACG CCTGGCTGCC GAACTGGGTC CCGACATTGT GGCGCGTGGC
GGTCTGACGA TCACGACAAC GCTTGATCTG GGGTTGCAGG AAGCCGCAGA ACGCGCGTTG
CGTCGTCAGA TCGCTGCGCT TGCCAACCCG TATGATGGCA GCCCGGATCG GCGTGCCCGC
AATGGCGCAG TGGTGGTGAT CGACCCGCGC GACGGCGCCA TTCTGGCGAT GGTCGGCAGT
CCGGATTTCA CCGACAACAC GATTCAGGGG CAGGTCAACG CCGCACTTGC GCTCCGCCAG
CCCGGTTCGG CGATCAAGCC GCTCACCTAT GCGGCAGCGC TTGAACGTGG ATGGACACCG
GCGACCACGA TCCTTGACGT ACCGGTGTCG TTCGTCGACT CCAGCGGACA GGTCTACGCC
CCTCTGAACT ACGACCGCGC GTTTCACGGT CCTCTGTCGC TGCGCGAGGC GCTTGCCACC
TCCTCGAATG TCGCCGCCGT TCGCACCCTC GATTTTGTCG GCATTCCAGC GTTGCTCGAT
ATGGCGGCGC GTCTTGGCAT CACATCACTC GGCAATCAGC CGGGGCGCTT CGGTCTGGCG
CTGACCCTCG GCGGCGGCGA GGTGTCGCTC CTGGAGTTGA CCGGCGCATA CGCGGCATTT
GCAAATGGCG GCATGCGGGT AACGCCGTAT GCTATCCTGA AGATCGGCGG CGATCCGGTT
TCGCGTGCGT CTGGGCCGGA AGCGGTCGAT CCGCCATCCC CGGCGCTCGA TCCGCGCATT
GCGTATCTGA TCAGCGACAT CCTGAGTGAT CGGTATGCCC GTATGCGCGC ATTTGGCGGC
GCGCTCGACA TGGATCGCCC CGCAGCGGTC AAAACCGGTA CCACAACCGA CTGGCGCGAC
AACTGGACGG TTGGATATAC ACCAGACCGG GTGGTTGGGG TGTGGATCGG GAATGCTGAC
GGTCGGGCGA TGGAGGCGGT GAGCGGCGTC ACCGGCGCCG CTCCGGTCTG GCGCCAGGTG
ATGCTGGCGG CGCACCGCGG ATTGCCGCCG CGTCCGTTTC CCCGTCCGCC GGGGATCGTC
GAACTGACGA TCTGCGCTGA GGGCGGTCTG CTGCCGTCGC CGGTCTGCCC GGCGACGCGA
CTCGAACGGT TTCTGGCAGA GCATACGCCG CAGCGACCGG ACGATACGCA CATTCTGGTG
CGCGTCGATC CGGTGCGTGA CTGTCGGGCG CCGGATCGGT ATCCGTCGGC GCGTACCGTG
GTGCGCATCT ATCGGGTGTT GCCGCCGGAA GCGCAACCGT GGGCGGAGAG CGCTGGCATT
CCCCGTCCAC CACGCCAGGT CTGCCCGCCG ATCACGGCGA ATACTGGCGA TCCGCCGGGC
AACAATGCGC CTGCGTCTGG TTCAGGCGGG GACGCTGGCG AACGCGAACC CCGTCTCATA
TCGCGCAACA CGCTGCCATT GCTGATCACC GCTCCTGCCC ACGGTGCGGT GTTTGCATTG
AGTCCAGGCG TACCGGCGGA GCGACAGCAG ATTGCGCTGA CCGTGGGGGC GGCGCCAGAG
ATCGACCGTG TGACGATCTA CATTAATGGT GCGCCGCTGG TTACAACGTC GGCGTCACGG
GTATTCTGGC AACTGCAACC GGGGAGGCAT CGGGTGTGGG CAGAGGGACA CAACGTGGAT
GGGCACATCG TGCGCAGTCC GATCGTCGAG TTTGAAGTGC GTCAGGCGTC ACAGGCAAAC
TGA
|
|---|
| Protein sequence | MLRFGSKRLR SVAAIVARCT GICVLALALL VAWLWMSTDL PSRERLRERA ALDATRVLDR
NGRLLYAVPD PLGAQRSHVS LGDISPALIQ ATIAVEDAGF YANPGIDLRG IARAIWLNLQ
QGRIVAGGST ITQQLARSFL LDPSLAQEQT LERKAREMIL ALKLTATLPK DDILEMYLNQ
TYYGAMSYGV EAASQRFFGK PARDLDLAEA ALIAGLPQAP SRYNPLINPD AARARQRDVL
VAMVRVGFIT PAEAEIAANE PLRFSAGCDT PGCLPRAPHF VFFVLERLAA ELGPDIVARG
GLTITTTLDL GLQEAAERAL RRQIAALANP YDGSPDRRAR NGAVVVIDPR DGAILAMVGS
PDFTDNTIQG QVNAALALRQ PGSAIKPLTY AAALERGWTP ATTILDVPVS FVDSSGQVYA
PLNYDRAFHG PLSLREALAT SSNVAAVRTL DFVGIPALLD MAARLGITSL GNQPGRFGLA
LTLGGGEVSL LELTGAYAAF ANGGMRVTPY AILKIGGDPV SRASGPEAVD PPSPALDPRI
AYLISDILSD RYARMRAFGG ALDMDRPAAV KTGTTTDWRD NWTVGYTPDR VVGVWIGNAD
GRAMEAVSGV TGAAPVWRQV MLAAHRGLPP RPFPRPPGIV ELTICAEGGL LPSPVCPATR
LERFLAEHTP QRPDDTHILV RVDPVRDCRA PDRYPSARTV VRIYRVLPPE AQPWAESAGI
PRPPRQVCPP ITANTGDPPG NNAPASGSGG DAGEREPRLI SRNTLPLLIT APAHGAVFAL
SPGVPAERQQ IALTVGAAPE IDRVTIYING APLVTTSASR VFWQLQPGRH RVWAEGHNVD
GHIVRSPIVE FEVRQASQAN
|
|---|
| |