Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2597 |
Symbol | |
ID | 5209566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 3225786 |
End bp | 3227282 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640596201 |
Product | pyridoxal-dependent decarboxylase |
Protein accession | YP_001276923 |
Protein GI | 148656718 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.317944 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGTT CCCGCCTTCG CCAGATCATC AACCCGCTGG GCGCGCGTGC CGCTGCCGCA TTTGAGGCGG CGCTGCGGCG CATTCCGGCG GTTCAGCGAC GGCTCGAAGC GCAGTATGCT GCACTGCTTG CCGATATTGA ACCATCGCTC AAACCATACC GCCACGAATT TCCGGCATAT ACCCGCCTCC CGCCGGTCGG ACGCAACCGC GATGATATCC TTGCCATGAT GCGCCAGCTT GCCGAACGCG AAACACCGCG CTGGCGCGAC GGGTATGTGT CGGGCGCGGT GTACCACGGC GATCCCGATC ACCTTGCGTT TCTGAATCAG GCGTATGCGC TCCATTCCGT AAGCAATCCG CTACACGTCG ATCTCTGGCC CAGCATTGCG CGATACGAGG CGGAGATTGT TGCAATGACG GCGACCATGC TCGGCGGCGG ACCGGGCGTG TGCGGCACCG TCACTTCCGG CGGCACCGAG AGCATTCTGC TCGCCATGAA GACCTACCGC GATTGGGCGC GTGAACGTCT GGGCATTCGC CATCCCGAAG TGGTTGCGCC GGTCACCGCG CACGCAGCGT TCGACAAAGC TGCACACTAC TTTGGCATCC GATTGGTGCG CATCCCGGTT GATGACGGCT TCCGCGCCGA CGTTGCCGCC GCGCGCCGCG CTCTGACCCG CAACACGATT GCCCTGGTCG GTTCAGCGCC CTCATTCCCG CACGGTGTTA TTGACCCGAT TGCCGATCTT GCGGCGCTGG CGCATGATCG ACGCATTGGC ATACACGTCG ATGCCTGCCT GGGCGGGTTT GTGCTCCCCT GGGCGCAGCG TCTCGGCTAT CCGGTTCCGC CGTTCGACTT CAACGTCCCC GGAGTAACTT CCATCTCGGT TGATACACAC AAATACGGGT ATGCGCCCAA AGGAACCTCT GTCATTCTCT ACCGCACCGA AGCATTGCGA CGCTTCCAGT ACTATGTCGC CGCCGACTGG CCCGGCGGGC TGTACGTTTC ACCAACGATG GCGGGCAGTC GTCCTGGCGC ACTGAGCGCT GCTGCGTGGG CGGCGATGGT CAGCATGGGG GAACAGGGGT ATCTGGAAGC AACGCGGCGC ATCCTGGAAA CAGCGCATCG GATCCGCACC GGCATCGAGG CGATCCCGGA ACTCCGCATT CTCGGCGATC CGCTCTGGGT GATCGCCTTC ACAGCGACGC GCCTGGACAT CTACCGCATC CTTGACCGGA TGGCGCAACG CGGCTGGAAC CTCAACGGAC TGCACCATCC TCCAGCAGTC CACATCTGCG TCACCCTGCC ACACACTGCG CCCGGCGTCG CCGACCGATT CATCGCCGAC CTGCGCGACT CGGTCGCTGC CGTTCGCCGT GAACCGCGCG CCAGAGGGGG AATGGCGCCG GTGTACGGCA TGGCTGCATC ACTGCCGTTC CGTGGCGTCA TCGGCGACCT GCTGCGGCGC TATCTCGACG TGGTGTACAA ACCGTAG
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Protein sequence | MARSRLRQII NPLGARAAAA FEAALRRIPA VQRRLEAQYA ALLADIEPSL KPYRHEFPAY TRLPPVGRNR DDILAMMRQL AERETPRWRD GYVSGAVYHG DPDHLAFLNQ AYALHSVSNP LHVDLWPSIA RYEAEIVAMT ATMLGGGPGV CGTVTSGGTE SILLAMKTYR DWARERLGIR HPEVVAPVTA HAAFDKAAHY FGIRLVRIPV DDGFRADVAA ARRALTRNTI ALVGSAPSFP HGVIDPIADL AALAHDRRIG IHVDACLGGF VLPWAQRLGY PVPPFDFNVP GVTSISVDTH KYGYAPKGTS VILYRTEALR RFQYYVAADW PGGLYVSPTM AGSRPGALSA AAWAAMVSMG EQGYLEATRR ILETAHRIRT GIEAIPELRI LGDPLWVIAF TATRLDIYRI LDRMAQRGWN LNGLHHPPAV HICVTLPHTA PGVADRFIAD LRDSVAAVRR EPRARGGMAP VYGMAASLPF RGVIGDLLRR YLDVVYKP
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