Gene RoseRS_2479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_2479 
Symbol 
ID5209448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp3066179 
End bp3067309 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content60% 
IMG OID640596084 
ProductABC-2 type transporter 
Protein accessionYP_001276806 
Protein GI148656601 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID[TIGR00025] ABC transporter efflux protein, DrrB family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.664004 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.270232 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA TCCTGCCGAT CATTCGCAAG GAATTCATCC ACATTCTGCG TGACCGGCGC 
GCGCTGATGA TCGCCTTCCT GACGCCGGTG ATCCAGATGG TCATCCTCGG CTACGCTGCA
ACGACCGATG TGCGCAATGT GCCGCTGGCA GTCCTTGATC AGGATCGCAC CCGCCAGAGC
CGCGCGCTGA TCGACGCCTT CGTGCAGTCC GGGCAATTCA CAGTCTATCG TTATGTCATG
TCAGAACGTG ATCTGGCGGC GCAGATTGAT AGCGGTCAGG CGCGCGCCGG GCTGATCATT
CCACCGGATT ACGGGCGCAC CGTCACTGCC GGGCGTGACG TTGGGGTTGT TTTTGTGCTC
GACGGATCTG ATCCATCGGT TGCATCGAAT GCGCTGTCAT CGGCACGGCT GATCGGCGTG
GCGCTGGCAA CCAGGGTGCG CGAAGAGACG CTGGCGCGAC GCGGCGCGAC GACCACGCTC
ATGCCCGGTG TGCCGCAGGT GCGTGAGCGT GTCTGGTACA ACCCAGACAT GGACAGCGCC
GTCTTCATGG TGCCGGGGCT GATCGGACTG GTGCTGCAAT TTCAGGCGAC CCTCCTGACG
GCGTCGGCAG TGGTGCGTGA ACGGGAACGC GGCACGATCG AACAGTTGAT CGTGACCCCG
ATTCGCCCCT ACGAGTTGAT GCTGGGAAAA ATCCTGCCGT ATGCCGTGAT CGAACTGCTC
GTCGTCGGCG AGGTGTTGCT GGTAGGAACG CTCTGGTTTG GCGTTCCAAT CCGCGGCAGT
TTGATCCTGC TGGTGGCTAT CGCGTGCCTG TTCCTGGTTT CGACGCTGGC GCTCGGACTG
CTGATCTCGA CCATTGCGCA CACCCAGTTT GAAGCGTTCC AGTTGTCCTT TCTGACCCTC
TTGCCGTCGG TGTTCATTTC CGGCTTCATC TACCCGATCG ATGCCATGCC TGCTGCGCTC
CAGCTGATCA GCAAGATCAT CCCGCTGACC TACTTTCTGG TCGTTGTGCG CGGCATCATC
ATCAAGGGTG TGGGCATCGA AGCGTTGCTG CCGCAGATCG CAGCGTTGAC AATCTTCGGC
GCGGCGCTCC TGACCATCGC ATCACTGCGC TTCAGAAAGC GATTGGATTG A
 
Protein sequence
MNRILPIIRK EFIHILRDRR ALMIAFLTPV IQMVILGYAA TTDVRNVPLA VLDQDRTRQS 
RALIDAFVQS GQFTVYRYVM SERDLAAQID SGQARAGLII PPDYGRTVTA GRDVGVVFVL
DGSDPSVASN ALSSARLIGV ALATRVREET LARRGATTTL MPGVPQVRER VWYNPDMDSA
VFMVPGLIGL VLQFQATLLT ASAVVRERER GTIEQLIVTP IRPYELMLGK ILPYAVIELL
VVGEVLLVGT LWFGVPIRGS LILLVAIACL FLVSTLALGL LISTIAHTQF EAFQLSFLTL
LPSVFISGFI YPIDAMPAAL QLISKIIPLT YFLVVVRGII IKGVGIEALL PQIAALTIFG
AALLTIASLR FRKRLD