| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2459 |
|---|
| Symbol | |
|---|
| ID | 5209428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3044333 |
|---|
| End bp | 3045997 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640596064 |
|---|
| Product | cobalamin B12-binding domain-containing protein |
|---|
| Protein accession | YP_001276786 |
|---|
| Protein GI | 148656581 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5012] Predicted cobalamin binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0212357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA AACAGAAAAC GGTGGTTGCA GCGGCGCTTG GCGAATGTGT CCATGTCGCA
GGCGTGATGA ACTTTCTGCG TCTGGCAGAG GAAGCTGGCT GGCGCACCGT ATTTCTCGGT
CCGGCGACGC CGGTCGAGCG GGTTCTCGAA GCGGCGCGAC GCGAACAGGC TGACCTGGTT
GGCGTATCGT ACCGGTTGAC GCCGGAAACC GGCGCGCATC TGCTGGGACG GTTCGCCGAG
GCTGCCGATG ATCTGCACGC TGCCGGAGTG CGCTTCGCCT TCGCCGGGAC GCCGCCGCTG
GCGGAAAAAG CGGCAACGCT TGGGTTTTTC GAGCAGGTGT TCGACGGAAG CGAACCTGCC
GATCAGGTGC TGGCGTATCT CAGGGGGCAA AACCCGGCGA CGGCAACCGA AGCGGATTTT
CCGCAACGCA CGGTTGACCG CATTCGCTGG AAGTCGCCAT ACCCTCTGCT GCGGCACCAT
TTTGGTTTGC CGACCATGCA GGCGACCATC GCAGGGATTG CAAAAATCGC CGAGTCGCGG
CGCCTCGATG TCATTTCCCT CGGTACCGAT CAGGACGCCC AGGAGAATTT CTTCCACCCC
GAACGCCAGG ACCCGGCGCG CACCGGAGCG GGCGGCGTCC CGGTGCGCAG CGCCGACGAT
TACCGCGCCC TCTACGCTGC CAGTCGGCGG GGGAACTACC CCTTGATGAG GACGTATTCC
GGCACCGACG ACTTCGTTCG CCTGGCGGAA TTGTATGTCG AGACGATCAA CATCGCCTGG
TGCGCCATCC CGCTCTTCTG GTTCAACCGG ATGGATGGAC GTGGACCGTG GGATCTGGAG
GGATCGATCC GTGAGCATCA GACGATCATG CGCTGGTACG GCGAGCGCGA TATCCCGGTC
GAACTCAACG AACCGCATCA CTGGGGCATG CGCGACGCGC CTGATACGGT CTTCGTCGCC
AGCGCCTACC TCTCGGCGTA CAACGCCCGC GCCTTTGGCG TGCGCGATTA CATTGCACAG
TTGATGTTCA ACAGCCCACC CGGTCTTTCC GACGCCATGG ACCTGGCAAA AATGCTGGCG
GTGATCGAGA TCACCGCGCC GCTGGCGGGA CCGGATTTCC GCATCTGGAA GCAGACCCGC
ACCGGGTTGC TGAGTTACCC GGTCGATCCG GCAGCATCGC GCGCACACCT CTCGGCGAGT
ATCTACCTCC AGATGGCGCT TCGTCCGCAT ATCGTGCATG TTGTGGGTCA TACCGAAGCA
CACCACGCCG CAACCGCCGA TGACGTGATC GAAGCCTGCG ATATGGCGCG CCGCGCTATC
GAAAATGCGC TACGCGGTCA ACCCGATATG ACGGCGGATC CGGCGGTGCG GGCGCGGGCA
GCGCAACTGG TCGAAGAGAC GCATCTGCTC CTCGATGCGA TTGCGCAACT TGCACCGCCG
GGCGTCACCG ATCCGCTGTC CGATCCCGCC ACCCTGACGA AAGCCGTTGC CGTCGGGTTG
CTCGATGCAC CCCAGTTGCG CAACAATCCC TTTGCACCCG GTCGCGTCGT TACGCGCTTT
ATCAACGGCA TGTGCGTGGC GGTCGATGAT CAGGGTCGTC CGCTCGACGA AAAGCAACGC
ATCCGGCAGA TTCTGGATCA TCATACGACG CTTGTAACGA CTTGA
|
|---|
| Protein sequence | MAEKQKTVVA AALGECVHVA GVMNFLRLAE EAGWRTVFLG PATPVERVLE AARREQADLV
GVSYRLTPET GAHLLGRFAE AADDLHAAGV RFAFAGTPPL AEKAATLGFF EQVFDGSEPA
DQVLAYLRGQ NPATATEADF PQRTVDRIRW KSPYPLLRHH FGLPTMQATI AGIAKIAESR
RLDVISLGTD QDAQENFFHP ERQDPARTGA GGVPVRSADD YRALYAASRR GNYPLMRTYS
GTDDFVRLAE LYVETINIAW CAIPLFWFNR MDGRGPWDLE GSIREHQTIM RWYGERDIPV
ELNEPHHWGM RDAPDTVFVA SAYLSAYNAR AFGVRDYIAQ LMFNSPPGLS DAMDLAKMLA
VIEITAPLAG PDFRIWKQTR TGLLSYPVDP AASRAHLSAS IYLQMALRPH IVHVVGHTEA
HHAATADDVI EACDMARRAI ENALRGQPDM TADPAVRARA AQLVEETHLL LDAIAQLAPP
GVTDPLSDPA TLTKAVAVGL LDAPQLRNNP FAPGRVVTRF INGMCVAVDD QGRPLDEKQR
IRQILDHHTT LVTT
|
|---|
| |