| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2452 |
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| Symbol | |
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| ID | 5209421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 3032951 |
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| End bp | 3037156 |
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| Gene Length | 4206 bp |
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| Protein Length | 1401 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640596057 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001276779 |
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| Protein GI | 148656574 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0187956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCACG ATCGTCGCTA CCGCTGGACT GCGCTGTTCG CCCTGTTTGG TCTGGTTATC
GCTACCTTCG CTCTCCCCGG CGCACCACGT GTGGTGCGCG CCTCCGACAC TCCCACACCC
GCATCGGTCA CAATTGCCGG CAGTTTTCAG AGTGAACTGG GTTGCCCCGG CGACTGGCAG
CCTGAATGCA CCGTCACCCG CCTGGTGTAC GATGCAACTG ATCAGGTCTG GCAGGCGACC
TTTACAATTC CTGCTGGCTC ATGGGAGTAC AAGGCAGCGC TGAATGGATC ATGGGACGAA
AACTATGGCG CGAATGCGCA GCGCAATGGT TCCAACATTG CCCTGTCACT CAGTTCACCC
GCCCCTGTCA GGTTCTACTA CGACCACGAA ACGCACTGGG TCACCAGCAA CCGCAATACC
CGCATCGTCA CCGCGCCCGG CGACTACCAG AGCGAACTGG GTTGCCCTGG CGACTGGCAA
CCGGATTGTT TGCGCTCCTG GTTGCAGGAC CCTGATGGCG ATGGAACCTT CAGTGCGACG
GTAACCGGTC TGCCCGCCGG TCATTACCAG TTCAAGATCG CCATCGATGA GAATTGGAGC
GAAAACTACG GTGCTGGCAG CACTCCTGGC GGGGCGAATA TTCCGTTCAG TGTGCCTGCA
CCTGGCTATC GGGTGACGTT CAGGTTCGTT TCGGCGACCA ACACGCCGTC GGTGACGGTC
GTCAGCTCCG GGGCGCAGCC GGATAACAAT GTCGAGTGGG ATGGCGTGCG CCACGACTCG
CGCGATCCGC TCTACCGCAC GCCGGGTGGA GCGGTTCCAG CCGGGACGCC GGTCACCATC
CGTCTGCGCA CCTTCCACAA CGATGTGACG TCGGTTCGTC TGCGGGTGTA CGACCTGAAT
GCCAGCGCGC AACGGTTTTA CGATATGGCG CCTGCCGCAA CCGACGTGGC GTGCTATCAG
GAAGGTCTTG ACGGTAAAAC CTGTGACTTC TGGGAGGTGA CACTCAACGA GGCGTCGCCG
AATAATCTCT GGTATCGGTT CATTGTGACC GATGGCAGCG ATACAGATTA TTACGACGAC
AATACCCCTG CGCTCGATGG CGGTTTGGGC GGAATGACCG ACGATCAGGA GGATCACAGT
TGGGCGCTGA TGTTCTACGA TCCGGCGTTT ACCGTGCCGG AGTGGGCGAA GAACGCCGTG
ATCTACCAGA TCTTCCCGGA TCGCTTCCGC AATGGCGACC CGCGCAACGA CCCGCGCACC
GGCGACAGCC GGTATGACGA TCCGGTCATC GCGCTGCCGT GGGGGGAGTT GCCTGAGGGA
TACTGCCGCA ACTACAGCGA CGCCGCCACC AACTGCCCGT GGCGCTTCGA CGACACGCCG
CCGTCATGGA GTCCAACGAA GGAGAGTCCA CGTGGACGCG ACTACTATGG CGGTGATCTG
CGCGGTGTGA TCGGCCGGCT CGATTACCTG AAGAATCTCG GCGTGACGGT GATCTATTTC
AACCCGATCT TCCACGCGAA GTCGAACCAC CGCTACGATA CCTACGACTA CTTCCGCATC
GATCCGGCGC TCGGCACACT CGCCGACTTC CGGCGTCTGG TGCGCGAGGC GGAACGGCGC
GGCATCCGCG TGATCGTCGA TAGCGTCTTC AACCACATGT CATCGGATAG TCCGCAGTTC
GACCGCTACG GGTACTACGC CACCCTCGGC GCGTGTGAGT CGGCTGCATC GCCCTACCGC
GACTGGTTCC GTTTCCGCCG ACCCGGACCG GGCGAACCGT CACCCTGTGC GCCATCGACT
CCAGGCGGCG ACGATACCTA CTACGTCGGC TGGTTTGGCT TCGACAGCAT TCCGGAGATA
CGGAAAGAAA ATCCGGCGGT GCTGAACTAT TTCGTGATCG GACCGAACAG CGTGTCGCGC
TACTGGTTGC GCCAGGGAGC GAGCGGATGG CGCCTCGATG TGATGGGTGA TTCGTCCTTC
CCGCCGGACT ACTGGACCAC CTTCCGCACG GTGGTGCGCG AAACGCGCCA CGATGCGCTG
ATCATCGGCG AGTTGTGGCA GAAAGATAGC ACGCTGCTCC GACATCTGCG CGGCGATACT
GCCGACACAA CGATGAACTA CCGTCTGCGC GATGCGATCA TCGGCTTGCT GACGCCAGGA
CCTTTCGACT CGAAAGGGTT CGCCGACAGC GGACGCCAGA TCACGCCGTC GGAGTTCGCC
AACCGTATCA GTTCCATTCG TGAAGACTAC CCCGACGCTG CCTATCTGAC GCTGATGAAC
CTGGTCGGCA GCCACGACAC CGAGCGCATC CTGTGGACGT TGACGCCGGG CGCCGAGACC
CGCGCCGATA AGGAGTTCAA CGCCGCCAAT CTGGCGAACG GCAAACAACG CCTGCGGATC
GCTTCGCTCA TTCAGTTCAC CATGCCCGGC GCTCCGACGA TCTACTACGG CGATGAGGTT
GGCGTCACCG GCGATGACGA TCCCGATGAC CGGCGCACCT ATCCGTGGGT GGAGACCGGC
GGGAATCCCG ATCGATCGCT GCTGCGTCAC TACAGCGACC TGGCGCGCAT CCGCCATCAC
TACCGCTCGC TGCACGCCGG CAATCTCCGC TTCCTGATGG CAGACGATGC TGCCGGAACG
GTTGCCTATG CGCGCATCAG CGGCGATGAC GCGGCAATTG TGGCGATCAA TCGCAGTTCG
CAATCGCGCA CGGTTGATAT TCCGGTCGCT GGCGTTGTTC CCGACGGTAC GGCTTTCTTC
CCTTCGTACT GCGTTGCCAA TGACCAGTTG AAGGACTGGC TGAATGTTCA GAACGGCACA
GTGCGGGTGA CGCTCAACCC GATGAGCGCC GTGCTGCTGA CCAGTTACCT TGCCGATCTG
ACGCCGCCGC CGGTTCCGAC CAGCCTGCGG GTGACGGGTG AGGGCGACGG GCAGGTAAGC
CTGGCGTGGA ACAGCGTCCC CGGTGCAGCC GGATACAACC TCTACCGCAG TCCGTTGAGC
GGCGGCGGTT TCGTGAAGGT CAACAATGCG CCGCTGAGCG CAACCGCCTA CACCGACGCC
GGGCTGCGCA ATGCGCGCGA CTACTTCTAC GTCGTCACAT CCCTGGACGA GAAAGGGAAC
GAAAGCGCAT TCTCGAACGA AGTCCAGGCG ATGCCTCGCC TCCAGATCGG ATGGGCGAAC
CTGCAATGGC CCCCATCGAT TACCCACACC ATCAGCGCAA TCAACCGCAC CCCGCTGATC
TTCGGTCAGG TCTGGATCGA TGGCGTTACC AACCGTCCGG GAGCGACGGA AGGATTGCGC
GCGCAACTCG GGTATGGTCC ACGCGACAGC GACCCGGCAG GCAACCCCGC ATGGATCTGG
ATCGAGGCTG AGTTCAACGT CGATGCTGGC AACAACGACG AGTTCAAAGC CAGTCTGCTG
CCTGATCAAA CCGGAGATTT CGACTACGCT TATCGCTACA GCACGACCAA TGGACGCGAA
TGGACCTATG CCGACCTGGA CGGCATCGGC AACGGCTACA GCCCATCACA GGCGGGCAAA
CTCACGGTCG TCGCCAGCAG CGACACCACG CCGCCAGCGA CGCCAACCGG TCTGACTGTC
GTCACCGCTT CGCCAGCAGG CATTACCCTG CGCTGGAACG CGGTGACTGG CGATCCGACC
CTCTACGGCT ACGAAGTGCG TCGCAGCAGC GTGGCAGGCG GACCGTACAC CACGATTGCG
ACGGTCACCG GCGTCGAGTA CACCGACACG TCCATCACCC AGGGCGCAAC CTACTACTAC
GTCGTTCGCG CGGTGGATAC GTCGTTCAAC CGCTCCGCCA ATTCCGCCGA AGTCGCGGCG
ACCGCCGAAC TGCGGACGGT GAGCGTCACA TTTACCGTGA CTATACCACC CACGACCCCG
GCAGGCAGTA CAGTCTACAT CGCCGGGTTC CTCGACCGTC TCGACGGCAA CCTGCCGCAG
TGGAATCCCG GCGGCGTGGC GCTGACCCAG ACCGGTCCGA ACCAGTGGTC GATCACACTC
ACCGGTAAGG AGACAACCCA GATCGAGTAC AAGTACACCC TTGGTTCGTG GGATTACGTC
GAGAAGGGTG CGGCGTGCGA CGAGATCGCC AACCGCCAGT TGACTCTCAC CTATGGTGTG
AGCGGTGTGC AGATCGTGAA CGATAGCGTA CCAAACTGGC GCAATGTTGC GCCGTGCGGC
AACTGA
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| Protein sequence | MSHDRRYRWT ALFALFGLVI ATFALPGAPR VVRASDTPTP ASVTIAGSFQ SELGCPGDWQ
PECTVTRLVY DATDQVWQAT FTIPAGSWEY KAALNGSWDE NYGANAQRNG SNIALSLSSP
APVRFYYDHE THWVTSNRNT RIVTAPGDYQ SELGCPGDWQ PDCLRSWLQD PDGDGTFSAT
VTGLPAGHYQ FKIAIDENWS ENYGAGSTPG GANIPFSVPA PGYRVTFRFV SATNTPSVTV
VSSGAQPDNN VEWDGVRHDS RDPLYRTPGG AVPAGTPVTI RLRTFHNDVT SVRLRVYDLN
ASAQRFYDMA PAATDVACYQ EGLDGKTCDF WEVTLNEASP NNLWYRFIVT DGSDTDYYDD
NTPALDGGLG GMTDDQEDHS WALMFYDPAF TVPEWAKNAV IYQIFPDRFR NGDPRNDPRT
GDSRYDDPVI ALPWGELPEG YCRNYSDAAT NCPWRFDDTP PSWSPTKESP RGRDYYGGDL
RGVIGRLDYL KNLGVTVIYF NPIFHAKSNH RYDTYDYFRI DPALGTLADF RRLVREAERR
GIRVIVDSVF NHMSSDSPQF DRYGYYATLG ACESAASPYR DWFRFRRPGP GEPSPCAPST
PGGDDTYYVG WFGFDSIPEI RKENPAVLNY FVIGPNSVSR YWLRQGASGW RLDVMGDSSF
PPDYWTTFRT VVRETRHDAL IIGELWQKDS TLLRHLRGDT ADTTMNYRLR DAIIGLLTPG
PFDSKGFADS GRQITPSEFA NRISSIREDY PDAAYLTLMN LVGSHDTERI LWTLTPGAET
RADKEFNAAN LANGKQRLRI ASLIQFTMPG APTIYYGDEV GVTGDDDPDD RRTYPWVETG
GNPDRSLLRH YSDLARIRHH YRSLHAGNLR FLMADDAAGT VAYARISGDD AAIVAINRSS
QSRTVDIPVA GVVPDGTAFF PSYCVANDQL KDWLNVQNGT VRVTLNPMSA VLLTSYLADL
TPPPVPTSLR VTGEGDGQVS LAWNSVPGAA GYNLYRSPLS GGGFVKVNNA PLSATAYTDA
GLRNARDYFY VVTSLDEKGN ESAFSNEVQA MPRLQIGWAN LQWPPSITHT ISAINRTPLI
FGQVWIDGVT NRPGATEGLR AQLGYGPRDS DPAGNPAWIW IEAEFNVDAG NNDEFKASLL
PDQTGDFDYA YRYSTTNGRE WTYADLDGIG NGYSPSQAGK LTVVASSDTT PPATPTGLTV
VTASPAGITL RWNAVTGDPT LYGYEVRRSS VAGGPYTTIA TVTGVEYTDT SITQGATYYY
VVRAVDTSFN RSANSAEVAA TAELRTVSVT FTVTIPPTTP AGSTVYIAGF LDRLDGNLPQ
WNPGGVALTQ TGPNQWSITL TGKETTQIEY KYTLGSWDYV EKGAACDEIA NRQLTLTYGV
SGVQIVNDSV PNWRNVAPCG N
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