Gene RoseRS_2315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_2315 
Symbol 
ID5209282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp2862230 
End bp2865007 
Gene Length2778 bp 
Protein Length925 aa 
Translation table11 
GC content63% 
IMG OID640595920 
Productextracellular solute-binding protein 
Protein accessionYP_001276644 
Protein GI148656439 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGTA TATGGCTCCT GGTTCTTGCG GCAGTGCTGC TGGCATCGTG CGGCATGCCG 
CAGCCATCGG GCGTTGCGAC ACCGGCGTCT CCAGGCGGAA CGCCGTCAAC CGGTCAGAAC
CAGCCGGTCA CGATCTCATT TGCGGTATGG GAATACGAGC GCAGCATCTA TCAACCGCTG
GCGGAGCGGT TTATGTCCGA ACATCCCGAC ATCAACGTGG TGCTCGTATC GCTTGACGAT
ATCATGATGT TCAATCCCGG CAATGACGCA CCTTACAGTC CGCTCGATCA GTTGCGCCGG
ATTGTATCGG CTGCCGATAC CGCTCCTTCA TTTGCGGTGA ACCAGGAGGC ATTCGGCACA
CCTTTGCTCT TCGACCTGAA GCCGCTGATG GACGCCGACG CGACCTTTCA GCGCGACGAT
TTCTTTCCCG GAACCATTGA GCACTATTCT GCAAAGGGCG GCATCTGGGC GCTGCCGCGC
TACCATTCGG CGCCGCTGAT GGTCTACAAC CGCGCCCTGT TCCAGAACGC CAATCTGCCC
GAGCCGCGCC CCGGATGGAC GTGGGAAGAG GCGCTGGCGA CCGCCGAGCG CCTGACCGAG
CACAGCGGTG CAACCACTCT AACCTACGGC TTTATGGAGC CGAGCAGCGG CGTGGTGCCG
CTTTTGGAGT TGCTCAGCGC GCAGGGCGTC GATGTGCTGA ACGCATCGCC GATGGAAACC
GATCTGACGG CGCCGGAGTA TGTCGCCGTC ATTGAACGCC TGCGCGATCT GTATCGCCGC
GGCGTCCTGG TCGAACCATA CAGTCGCAGC GGTCCCGCCA ACGACCCCGC GCAGTTGGTG
CGTGAAGGGC GCGTGGCGAT CTGGAGCGAT ATGACCTATA TCAGCAACGA TGACGGCACG
CGATGGACGC CGGATTTCCC GGTGGGGCGC GTCCCGTTCC CGGCGTCGGA ACTGATGCCG
TTCTTTACGT ACAGCGAAGG GTTTATCATC AGCGGCGGCA CGGCCCACCC GGAAGCCGCC
TGGCGCTGGA TCGAATGGCT CTCGCGCCAG CCGACCTGGC GCCCGGAAGA ATATGACGCA
ATCAGTCGTA TCCCGGCGCG GCAGTCGGTA GCGCAGCAGA TCGATTTCTG GCGCAATCTC
GACCCGCAGA CCGCCGAGGC GTACCGCTGG ACGCTGGCGA ACAGCAAGCC GACTCCGGAG
TCGCCGTCAG GTTTCGCCGT TATGAGCGCG TTGAGCCAGG CGATGCAGAC CGCGCTCAGC
GACCCGAAGG CGAATGTACG TGAGGCGCTG GCGGAAGCGC AGCGTCAGAT GCAGGAATCC
ATCGCCCGAC AGGAACTCAC GCCGACGCCC AAGCCCAACC TCAACCCGGT GGTGGTGGCG
ACGCCGGAGC CGCAGGAAGC GCCGGTCGGC GCAACAACCA TCACCTTCAT TCTGTACGGC
TACAATCCGG CTGAGATCCG TCGGGTTGCG CGCGCCTTTC GCGAACAGCG CCCCGATATC
TTTGTACAGT TGCAACCGTT CGAGTGGACG CCGGACACGC CGCAGGCGAG CGCCGCGACG
CTGGCGCAGA CCAGCGACTG CTTCACATGG AACGGACCGC TTCAGAGCGG CGATTACCCG
GCGCTGCTCG ACCTGCGCCC GCTGATTGAC GCCGACCCTG CCTTTCCGCG CGATGATTTC
CTGCCGGCAT CGCTGGCCTA CTACAGCAAC GAGGGACGCC TGTACGGACT GCCCCACGCG
ATCAGCATGC GCGTGCTCTC GTACAACCAC GCCGCGTTCG AAGCCGCCGG GCTGCAACCG
CCGCGCGCCG ACTGGACGCC GGACGATTTT CTGGCGGCGG CGCAGGCGTT GACGAAAGGC
GATGGCGAGC AGCGGCAGTG GGGCTACATT CCCCTGGGCG GACCGCAGGC CGATCTGCTC
TTCTTCGTCA GTCAGTTCGG CGCGAGCCTG ACAGTCGGCG AGGGGAAAGA CCTGCGCCCC
AACTACACCG ACCCGCGGAC GGTCGCCGCC ATTCGCTGGT ACCTCGACCT GAGCGCCGTC
CACAAGGTGA CGCCGCCGTT CAAGTTTTCC TACCGGCGCG ATGATCCCGG CGGCTTTGAA
ACGCGCTCCT TTGAATTGCT GCAATCGGGG CGGGTTGGGA TGTGGCTAGG GTATGGCGAG
ACATTCGAGA ACGCCGTCCT CATACCGGTT GAAGGAGGAC CGGCGCCAAC GGCTGCGCCG
TTGAGTCCGG TCGAACGTGA CATCCGGATT GCGCCATTGC CGGTGGGCAA CGCAGGATTG
CCACCCAGCG AGGTGTTTGC GCGCGGTCTG TTCATCTCGG CAAAAACGCA ACAGGCGCAG
GCGTGCTGGG AGTGGATCAA GTTCCTCTCC GGGGATGTGA CGGTGATGTA CGGTGACATG
CCTGCGCGCC GTTCGATTGC GCAGTCGGAG GCGTTCCTGA AACAGGTTCC GCCGGAGCGC
GCAGCAATGT TCGAGGCGTT CCGCGCAGCG ATGGCCGTAC CGGTGCGCAC GACGGTCACG
AGTAGCGCGA ATGCGATCTA CAGTCTCAAT TCCGACCCGT ACTGGCTCTT CCAGGCGCTG
AGCAACACGC TGGAGAAGGG GGCGAATCTC GAACAGGAAC TCGCTACTGC ACAGCGGCTC
GCCACGGCAT TCGCCGAATG TATGAACCGT GACGGCGCCA AAGCAGCGCA ATGTGCGAAA
CAGGTCGACC CCGACTACAA TGGGTACAAT GTCGAGGAAG AAGAGATGCC CATCCGACCG
GCCGGGCATG CGCCATAA
 
Protein sequence
MRRIWLLVLA AVLLASCGMP QPSGVATPAS PGGTPSTGQN QPVTISFAVW EYERSIYQPL 
AERFMSEHPD INVVLVSLDD IMMFNPGNDA PYSPLDQLRR IVSAADTAPS FAVNQEAFGT
PLLFDLKPLM DADATFQRDD FFPGTIEHYS AKGGIWALPR YHSAPLMVYN RALFQNANLP
EPRPGWTWEE ALATAERLTE HSGATTLTYG FMEPSSGVVP LLELLSAQGV DVLNASPMET
DLTAPEYVAV IERLRDLYRR GVLVEPYSRS GPANDPAQLV REGRVAIWSD MTYISNDDGT
RWTPDFPVGR VPFPASELMP FFTYSEGFII SGGTAHPEAA WRWIEWLSRQ PTWRPEEYDA
ISRIPARQSV AQQIDFWRNL DPQTAEAYRW TLANSKPTPE SPSGFAVMSA LSQAMQTALS
DPKANVREAL AEAQRQMQES IARQELTPTP KPNLNPVVVA TPEPQEAPVG ATTITFILYG
YNPAEIRRVA RAFREQRPDI FVQLQPFEWT PDTPQASAAT LAQTSDCFTW NGPLQSGDYP
ALLDLRPLID ADPAFPRDDF LPASLAYYSN EGRLYGLPHA ISMRVLSYNH AAFEAAGLQP
PRADWTPDDF LAAAQALTKG DGEQRQWGYI PLGGPQADLL FFVSQFGASL TVGEGKDLRP
NYTDPRTVAA IRWYLDLSAV HKVTPPFKFS YRRDDPGGFE TRSFELLQSG RVGMWLGYGE
TFENAVLIPV EGGPAPTAAP LSPVERDIRI APLPVGNAGL PPSEVFARGL FISAKTQQAQ
ACWEWIKFLS GDVTVMYGDM PARRSIAQSE AFLKQVPPER AAMFEAFRAA MAVPVRTTVT
SSANAIYSLN SDPYWLFQAL SNTLEKGANL EQELATAQRL ATAFAECMNR DGAKAAQCAK
QVDPDYNGYN VEEEEMPIRP AGHAP