Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2243 |
Symbol | |
ID | 5209206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2764240 |
End bp | 2765646 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640595844 |
Product | MATE efflux family protein |
Protein accession | YP_001276572 |
Protein GI | 148656367 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAAGT GTGTGACCAT TCCCGACATC GTCCCATCAA CTGCCGAAGC GGTGGCGCCT GCGGTGCAAT CGGCGGGAAC AGGCAGTGCA ACCATTGACC GACCAGCGCT GCGTCGTCGG GTGATGGGTC TGGCGTTGCC CGCCATCGGC GAAAACCTCC TCCACACAGC GCTTGGCATT GCCGACACCA TTCTGGTCGC CGGAATTGGC GTCGTTGCGC TGGCAGGCGT CGGCGCGGCG CTGAATGTGC TGTTCATCGT CATGGCAGCG CTGAGTTCGC TATCAGTCGG CGCGTCGGTG CTGGTAGCGC AGGCAATTGG TGCAGGCAAT TCCTCGCGGG CGAGTCACGT CGCCGGTCAG GCGCTGCTGT GGGGAATTGT GCTATCGCTG CCGATCACCC TCGCCGGGTT GATCTTTGCG ACACCAGTCG TGGCGCTGTA CGGCATGGCG CCCGATGCCA CTGCCGTTGC GGCGGAGTAT CTGACGATCA GCGCGGCGAG CATCCCGGCA CTGGCGCTCA TGCTGATCGG CGGGAGCGTG TTGCGCGGCG CGGGTGACAG CCGCACACCC ATGCTGGTGA CAGCACTGGC AAATGTGCTG AACCTGATCG CCTCATGGGG GTTGATCTAC GGGCATCTCG GCATGCCGGC GCTCGGTGTG GCTGGTAGCG CCTGGGGCAC GCTGATCGCG CGCGTCGCAG GCGCTGCACT TTTCCTGGTG ATCCTGCTGC GCACGAGCAC CCGCTTGCGC GTTGGCGGTC CCGGAACCTG GCGACCGCGC TGGCGCACCG CGCGCGAGGT GCTCTGGCTT GGCGCGCCTG CGGCGCTGGA AGAGATCATC ATCATCACAT CGTTTGCCGC ACTGACGCCG ATTGTCGTCG GGTTGGGCAC CGTGGCGCTT GCCGCACATC GCGTGGCGCT GAATGTCCTC TCGCTCTCGT TCATGCCGGG GATCGGGTTC AGCCTGGCGA CGACTGCGCT GGTCGGGCAG GCGGTCGGCG CCGGGCGGAT CGACGAAGCG CGCGCGGTGA CAAATGTGGC GACGCGCTGG GCGATCATCT GGATGGGCGG GTTGGGGGTG CTGTTCATCC TGTTTGCGCC GCAGATGGTC GGCATATTCA GCGGCGACCC GCAGTTGATC GCCATTGGCG CTGCGGCAGT GCAGGTCGTC GCGCTGGCGC AGCCGTTGTG GGCGGGCACA TTCGTTATTG GCGGCGCGCT ACGCGGCATC GGCGACACCC GCACACCAAT GGTCGTCTCT GGTATTCTGG GATGGGCAGC GGTCGGCATC GCGCTGCTGC TCGTGTATGT CTGGCCCGCG CTCTGGGCGG TATGGCTGGC GTACATCTTT ACCGGTCCGC CGGAGATCGG AGTGTTGTGG CGCCTGTGGC GTCGTAAGGT GCGTTGA
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Protein sequence | MEKCVTIPDI VPSTAEAVAP AVQSAGTGSA TIDRPALRRR VMGLALPAIG ENLLHTALGI ADTILVAGIG VVALAGVGAA LNVLFIVMAA LSSLSVGASV LVAQAIGAGN SSRASHVAGQ ALLWGIVLSL PITLAGLIFA TPVVALYGMA PDATAVAAEY LTISAASIPA LALMLIGGSV LRGAGDSRTP MLVTALANVL NLIASWGLIY GHLGMPALGV AGSAWGTLIA RVAGAALFLV ILLRTSTRLR VGGPGTWRPR WRTAREVLWL GAPAALEEII IITSFAALTP IVVGLGTVAL AAHRVALNVL SLSFMPGIGF SLATTALVGQ AVGAGRIDEA RAVTNVATRW AIIWMGGLGV LFILFAPQMV GIFSGDPQLI AIGAAAVQVV ALAQPLWAGT FVIGGALRGI GDTRTPMVVS GILGWAAVGI ALLLVYVWPA LWAVWLAYIF TGPPEIGVLW RLWRRKVR
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