Gene RoseRS_2211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_2211 
Symbol 
ID5209174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp2724034 
End bp2725890 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content64% 
IMG OID640595813 
ProductType IV secretory pathway VirB4 components-like protein 
Protein accessionYP_001276541 
Protein GI148656336 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3451] Type IV secretory pathway, VirB4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.165062 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCTCC GCGAAGCGCT ATCCAAACCG ATCATCGAGC CGGCGCGTCA TCGTCGCAGT 
CCACATGCGG CGCTGATCTC CGGCGCGACC ACGCTCACCA CGTTGCTGGC GCCAGACGGC
ATCGACCGGC GCTGGAGCCA TATGGTGCAG ATTGGCGATT CGTTTATGAC CACCCTGGAA
GTGCGCGCAT TCCCGCCGAC ACTCTCGCTG GCGTGGCTCG ATGATCCGGA GTTGGGTCTC
GACACCCCTG GCACGACCGT CCACCAACGC CTGGTTCCCA TTCCCGACGC ACTGGCGCGT
CGGGTGCTGG CGCGCAGTGA AGACGCGGCG CTGGGCACGC TGGCAGGTGA TGCGCAGGCG
GGTACGCACT TCGACATGGA AGCGCAACAG GGGGTCGAAG CGACGGCGGC GCTGCGCCAC
GATCTGACCG CAGGAACGGA TCGCCTGTTC CAGGTAGCGG TGACGATTAC ACTTGCTGCC
GCGACACCCG AAGAACTGGC GGCGCGCGTG GATCGCGTGC GTCTGGCTGC GGCTCAGCAG
GGCATCCTGC TGGGTGTTGT GCAATTTCAA CAATGGGAAG GGTATCTGGG CGCTTTGCCG
CTCGGATATG ATCAACCGGG ACTGCTGCAC GACACCAGCG GGCGCGCCGC TGCGATGGGG
TTGCCAACCG CTGCGCCAGG GTTGACACGT CGCGGCGGGC TGCCCATCGT GTGGGGAGAA
CATCCCCGCA GCGGCGCGCC GATCGTGTAT GACCGCTGGC AGGCGACCAA TCCGCATATG
CTGATAGTCG CCGAGTCGGG CAGCGGCAAA ACCTACACCA TGGGCGGATT GCTGGCACAG
GAACTGGCGC TTGGCGAAGA CGCCCTGCTC ATTCTCGACC CGAAACGACA GGAATACCGC
TCGCTGACGA CGGCGCTCGG CGGGGCGTAC ATTTCGCTCT CCGGTCGCGC CGGGTACCAT
ATCAACCCCC TGGAACTGCC GCCGCTCGCG CCGGAGCGCG CCCGCGCCGT CGCTGCGCTG
GAGGAGGACC TGCTTGGACA GCGGATCAGC GTTGTCAAAG CGCTGATAAC GCGCGAACTG
AAAGCGCAGG GCGCGGCGAT CGACGCAGTC GGCGCAGCGG CGATCCAGGA TGCCATTGCT
GCCGCCTATG CAGCACGCGG GATCAGCAGC GATCCACGCA CCTTTACCCA ACCGATGCCC
ACCTTCAGCG ATGTGCAGCA GTACCTGGCG GAAATTGCTC CTGAACTGGC GCGCGCATTG
ACGCTTTTCA CGCGCGGCAC GATTGGCGAC CTGTTCAACC ATCCGTCGAA CGTGCCGACC
GACAACCCGC TGCTGGCGCT CGATCTCTGG TCGTTGCTCC AGAGCAACGA CGAAACGCTT
GCGCGCCTGT TGCCGGTGAT TGTCATGGAT TTTTTTGTAA CCACCGCGAT CAACCGTCCC
ACCGGTCGCC GCAGCCATCT GGTGCTCGAC GAAGCGCACG CCCTGCTCCA CTCGGAAGTC
GGGGCGCGCA CCCTGCAAAT GATCTTTCGC ATTGGGCGGA GTTTGCAGTT CAAAGCGACT
GTTATCACCC AGAGCCTCGA CGATCTGGAC GAAAGCGATC AAACGCGCGT GTTGCTGGAG
AATGCGCGCA CCAAACTCAT CCTCGGATTG AACCGCGACT CGGACGCCGT CAACCGGGCA
ACCGCCATTC TGCGCCTGAA TGAAGAGGAA GCGGCGTATC TGGCGACCTG TCGGATCGAG
CGGGGAATTG GCGCAACGGC GTTGCTTCTG GCGGACGGTG AACGCACGCC GCTCTTCATT
CCAAAGTGGC CCGAAACGAT CCATCGCATC GTTACGGGCA CAGGGGGCGA CCGATGA
 
Protein sequence
MSLREALSKP IIEPARHRRS PHAALISGAT TLTTLLAPDG IDRRWSHMVQ IGDSFMTTLE 
VRAFPPTLSL AWLDDPELGL DTPGTTVHQR LVPIPDALAR RVLARSEDAA LGTLAGDAQA
GTHFDMEAQQ GVEATAALRH DLTAGTDRLF QVAVTITLAA ATPEELAARV DRVRLAAAQQ
GILLGVVQFQ QWEGYLGALP LGYDQPGLLH DTSGRAAAMG LPTAAPGLTR RGGLPIVWGE
HPRSGAPIVY DRWQATNPHM LIVAESGSGK TYTMGGLLAQ ELALGEDALL ILDPKRQEYR
SLTTALGGAY ISLSGRAGYH INPLELPPLA PERARAVAAL EEDLLGQRIS VVKALITREL
KAQGAAIDAV GAAAIQDAIA AAYAARGISS DPRTFTQPMP TFSDVQQYLA EIAPELARAL
TLFTRGTIGD LFNHPSNVPT DNPLLALDLW SLLQSNDETL ARLLPVIVMD FFVTTAINRP
TGRRSHLVLD EAHALLHSEV GARTLQMIFR IGRSLQFKAT VITQSLDDLD ESDQTRVLLE
NARTKLILGL NRDSDAVNRA TAILRLNEEE AAYLATCRIE RGIGATALLL ADGERTPLFI
PKWPETIHRI VTGTGGDR