Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2211 |
Symbol | |
ID | 5209174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2724034 |
End bp | 2725890 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640595813 |
Product | Type IV secretory pathway VirB4 components-like protein |
Protein accession | YP_001276541 |
Protein GI | 148656336 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.165062 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCTCC GCGAAGCGCT ATCCAAACCG ATCATCGAGC CGGCGCGTCA TCGTCGCAGT CCACATGCGG CGCTGATCTC CGGCGCGACC ACGCTCACCA CGTTGCTGGC GCCAGACGGC ATCGACCGGC GCTGGAGCCA TATGGTGCAG ATTGGCGATT CGTTTATGAC CACCCTGGAA GTGCGCGCAT TCCCGCCGAC ACTCTCGCTG GCGTGGCTCG ATGATCCGGA GTTGGGTCTC GACACCCCTG GCACGACCGT CCACCAACGC CTGGTTCCCA TTCCCGACGC ACTGGCGCGT CGGGTGCTGG CGCGCAGTGA AGACGCGGCG CTGGGCACGC TGGCAGGTGA TGCGCAGGCG GGTACGCACT TCGACATGGA AGCGCAACAG GGGGTCGAAG CGACGGCGGC GCTGCGCCAC GATCTGACCG CAGGAACGGA TCGCCTGTTC CAGGTAGCGG TGACGATTAC ACTTGCTGCC GCGACACCCG AAGAACTGGC GGCGCGCGTG GATCGCGTGC GTCTGGCTGC GGCTCAGCAG GGCATCCTGC TGGGTGTTGT GCAATTTCAA CAATGGGAAG GGTATCTGGG CGCTTTGCCG CTCGGATATG ATCAACCGGG ACTGCTGCAC GACACCAGCG GGCGCGCCGC TGCGATGGGG TTGCCAACCG CTGCGCCAGG GTTGACACGT CGCGGCGGGC TGCCCATCGT GTGGGGAGAA CATCCCCGCA GCGGCGCGCC GATCGTGTAT GACCGCTGGC AGGCGACCAA TCCGCATATG CTGATAGTCG CCGAGTCGGG CAGCGGCAAA ACCTACACCA TGGGCGGATT GCTGGCACAG GAACTGGCGC TTGGCGAAGA CGCCCTGCTC ATTCTCGACC CGAAACGACA GGAATACCGC TCGCTGACGA CGGCGCTCGG CGGGGCGTAC ATTTCGCTCT CCGGTCGCGC CGGGTACCAT ATCAACCCCC TGGAACTGCC GCCGCTCGCG CCGGAGCGCG CCCGCGCCGT CGCTGCGCTG GAGGAGGACC TGCTTGGACA GCGGATCAGC GTTGTCAAAG CGCTGATAAC GCGCGAACTG AAAGCGCAGG GCGCGGCGAT CGACGCAGTC GGCGCAGCGG CGATCCAGGA TGCCATTGCT GCCGCCTATG CAGCACGCGG GATCAGCAGC GATCCACGCA CCTTTACCCA ACCGATGCCC ACCTTCAGCG ATGTGCAGCA GTACCTGGCG GAAATTGCTC CTGAACTGGC GCGCGCATTG ACGCTTTTCA CGCGCGGCAC GATTGGCGAC CTGTTCAACC ATCCGTCGAA CGTGCCGACC GACAACCCGC TGCTGGCGCT CGATCTCTGG TCGTTGCTCC AGAGCAACGA CGAAACGCTT GCGCGCCTGT TGCCGGTGAT TGTCATGGAT TTTTTTGTAA CCACCGCGAT CAACCGTCCC ACCGGTCGCC GCAGCCATCT GGTGCTCGAC GAAGCGCACG CCCTGCTCCA CTCGGAAGTC GGGGCGCGCA CCCTGCAAAT GATCTTTCGC ATTGGGCGGA GTTTGCAGTT CAAAGCGACT GTTATCACCC AGAGCCTCGA CGATCTGGAC GAAAGCGATC AAACGCGCGT GTTGCTGGAG AATGCGCGCA CCAAACTCAT CCTCGGATTG AACCGCGACT CGGACGCCGT CAACCGGGCA ACCGCCATTC TGCGCCTGAA TGAAGAGGAA GCGGCGTATC TGGCGACCTG TCGGATCGAG CGGGGAATTG GCGCAACGGC GTTGCTTCTG GCGGACGGTG AACGCACGCC GCTCTTCATT CCAAAGTGGC CCGAAACGAT CCATCGCATC GTTACGGGCA CAGGGGGCGA CCGATGA
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Protein sequence | MSLREALSKP IIEPARHRRS PHAALISGAT TLTTLLAPDG IDRRWSHMVQ IGDSFMTTLE VRAFPPTLSL AWLDDPELGL DTPGTTVHQR LVPIPDALAR RVLARSEDAA LGTLAGDAQA GTHFDMEAQQ GVEATAALRH DLTAGTDRLF QVAVTITLAA ATPEELAARV DRVRLAAAQQ GILLGVVQFQ QWEGYLGALP LGYDQPGLLH DTSGRAAAMG LPTAAPGLTR RGGLPIVWGE HPRSGAPIVY DRWQATNPHM LIVAESGSGK TYTMGGLLAQ ELALGEDALL ILDPKRQEYR SLTTALGGAY ISLSGRAGYH INPLELPPLA PERARAVAAL EEDLLGQRIS VVKALITREL KAQGAAIDAV GAAAIQDAIA AAYAARGISS DPRTFTQPMP TFSDVQQYLA EIAPELARAL TLFTRGTIGD LFNHPSNVPT DNPLLALDLW SLLQSNDETL ARLLPVIVMD FFVTTAINRP TGRRSHLVLD EAHALLHSEV GARTLQMIFR IGRSLQFKAT VITQSLDDLD ESDQTRVLLE NARTKLILGL NRDSDAVNRA TAILRLNEEE AAYLATCRIE RGIGATALLL ADGERTPLFI PKWPETIHRI VTGTGGDR
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