| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2196 |
|---|
| Symbol | |
|---|
| ID | 5209159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2704774 |
|---|
| End bp | 2707674 |
|---|
| Gene Length | 2901 bp |
|---|
| Protein Length | 966 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640595798 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001276526 |
|---|
| Protein GI | 148656321 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.852049 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.245648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAAC ATTCCAGTCG CTCCGCCGTT CCGCGCCGCC GCGCGGTCAT GCTCGCGCTG
CTCCTGCTCG TCCTCGCCGC GCTCGGCGCC GCTGCGACCG GCATTGCGCG GGCGGACGGC
AGCACGACGC CCGGACCCGG ATGGGTCGCG GCGGACGCCA TTGTGTCATC GGAGTGCGTG
CCGTCCGGTC CCAACCGCAG CGACTGCTTT TCGCGCGTCG TCCGCGCCGA AGGACTGTAC
GAGTTCGTCC CGCGGCGCAT CCCGGTCGGC GCATCGACTG ACCCGCAGCG CCCATCATCC
CCGCCCGTCG TCATCGACCG CCCGCAGTGC CGCGTCAACG GCGAATTCAT CTTCTATCCG
CCGGGGAACT GGCATTACGG GCAGCGGTGG GTGAAAGCCG TCAGAGTCAC CTATGAGGTC
GACCCTGCCT ATGCCGATCT TCCAATCCAG TACCGTCGCT ATAAAGTAGT GATCACATCG
GAATGGCGCC CGACGGCAGG ACCGACCTAC GCCTTCTACG CCACAGAGGG GTGCGAGAAA
GTTCCGTCCT GGGTTCCCAC CGCGACCCCG GCGGGCGGCG GGGGAACCCC CACCCGCCCG
CCGGGCACGC CCCCGCCGGG CACGAGCATG ACGACCACGC CGACGAGACC CGCCGATCCG
GGGACGCAGA CGCCGGTTCC GACGGCGACG GCGACGCCGC CGCTGTGCAT TCCTGCGCCG
ATCGACCCCG TGCCGCTGAC GCTCTTTGCG GGGAACACGA ACCACTACAA CAACAACGGG
CAGCCGTTCA CGCCGTACAG CGGGCGCTAC TCCGGCGCCG ACGGGTCGAA ATACTATGAC
GGCGCCGCGT GGGGGCAGAT GCTCCACGGC GACCTGACTG ACCTCAACGG CATGGCGCAG
GAGCGCCGCC TCTGGACGCA GGTTCCGGCG AACGCCGTGG CGGAGGCGCG CTATCACTTC
GAGTTCGGGC GGCGCATGTT CGACGCCTCG GACGTAGCCC GTTCCCGCGG CGCGATGGTC
ATTCTCCAGG ACCTCGGCGC CGACATGCAA CCGGGCAGCG GCGACGACCG CCTGCTGGCG
TTCCTGTCGA TGGGCGACGC AAACTTGTTC GATAACCCGG CGAACCGCCG CTTGCGCGTG
CACGGGTCGC GCCTCGACGC CTACCCCCGC CTCAACCTGC CCGGACGCCC GTCCGGGTGG
CAGGCGGCGC TGGCGCCGGG CGTGCAGGTC TGGAGCAACG CCTTCTTCTC CTGGCAGGGG
AACCGGACGC CGCCGTACGC CTGGCGTTCG TGGCCGCAGC CGGAGCAGCG CGACGCCAAC
GGCAATCTGA CGCGATTCGC CGAAGACTGG CTCTATACGG ACGAGTACGG AACCAACCAC
GGACCGCTCA TGCTGCGCTT CATCACGGAA CGCGGACGGG CGTACCGGAT GGTGATGCTC
AACACCGTTC CAGGGTGCAA CACCGATATG CTGTCCACCA TCTCGCAACT CTACTTCTTC
ACCGACCCCG GCGCGAACGT GGCGGTGGAG AAGCAGGCGC CGGAGCGCGC GTCGCGCAAC
CAGATGGTCG GCTACAGTCT GACGGTGCGC AACACGTCGC AGACGACGGT GAACAACGTC
GTGCTGACCG ACACGCTGCC GCTCGGCATG CCGTTCGGCG GCGCCGATCT GACGCTGCGC
GACCCGAACA CGGGCGAAAC GACCACCGAG CGGGTGACGG CGACGGTCAG TCTGGCGCCG
TCGTGGACCG ACGGACGGAC GCTGGTGTGG AACCTCGGCA ATCTGGCGCC GGGCGAGGTG
CGGACGATTG ATCTGACCGT TCCGGCGACC GACGCGGCGC CGGATGCAGC GACGAACGTT
GCGGTCGTCA GCGCCGCCAA TGACGGCGAC CCGAACGACA ACCGCGCCGA AGCGACGACG
GTCTTCGTGC GCACGAACGT CAGGGTGCGC ATCACGACGC CGCGCATCGT GCGACCCGGG
CAGGAGTTCG AGACGGTGAT CTCCTACGAG AACACCTCGC CGGAGGACGC CACGAACGTG
CTGCTCGACT ATCAGGTCGT CCCCGACGTA ACGATCGTCG GCGCGACGCC GGGACACCAG
GAGATGAACA ACGAACGCCC GGTCTGGCGG TTGGGGACGG TCGCCGCCGG GCAACGCGGA
ACGGTGCGCG TGCGCGTGCA GGTTCCGCCG GCGGACAGTC CGGCGCTGCC GGTGGCGGTG
CTGCACCTGG CGCGCATCTC TGCGGACGCG GACGCAGACC CGATGGACAA TGCGGCGCAG
GCGACGACGA CGGTGCTGGT GGTTCCGCCG CCGCAGCGCG GCGAAGAGCG CCTGCGCATT
CACTCGGAGT TCGACCCGGA GCGCGGGGTG TACCTGAGCG AAGGGACGAC GGTGACGTGG
CCGGCGGGCG AAGTGATGGA CTTCACGCCG TTCATCGCGC CGGACAACCG TCAGGTCGGA
CTGCCGTACT ACCGCCTGGA TCGGAAGGTC GTGGCGTGGA GTTTCGTCGG AACAGGGAAC
CTGAACCTGA TCGGCGCGAC GTGCAAGGCG CGTGAGGAGC CGACTGCGGA AGACGTGCAG
CACGCCGACC TGTCGCGACT GAAGGGATGC ATCTATCGCT ATCACGTCAG CCCGTCGTCG
GCGCAGATGC GCTGGCAGGG GCATCTGTTC TGGGGGCAGT ACGCGCCGGA GCGCATGCGC
CAGGACGTGT ACGTGCGCAC GCCGTTGCCG ACGCGCGGAA CCGACCTGCG CATCCAGTAC
GCGGTGCTGA CGGAAGCCGT GGAAACAGGG TACGAGGACG TGGACGGCGA CGGGCGCACC
GACAGCGTGC TGGAGCGACG CACCGACGTG TTTGAGGCGA CCTATCGGGT GGAATTCGTC
GTACCACGCG ACGCGCGGTA G
|
|---|
| Protein sequence | MPEHSSRSAV PRRRAVMLAL LLLVLAALGA AATGIARADG STTPGPGWVA ADAIVSSECV
PSGPNRSDCF SRVVRAEGLY EFVPRRIPVG ASTDPQRPSS PPVVIDRPQC RVNGEFIFYP
PGNWHYGQRW VKAVRVTYEV DPAYADLPIQ YRRYKVVITS EWRPTAGPTY AFYATEGCEK
VPSWVPTATP AGGGGTPTRP PGTPPPGTSM TTTPTRPADP GTQTPVPTAT ATPPLCIPAP
IDPVPLTLFA GNTNHYNNNG QPFTPYSGRY SGADGSKYYD GAAWGQMLHG DLTDLNGMAQ
ERRLWTQVPA NAVAEARYHF EFGRRMFDAS DVARSRGAMV ILQDLGADMQ PGSGDDRLLA
FLSMGDANLF DNPANRRLRV HGSRLDAYPR LNLPGRPSGW QAALAPGVQV WSNAFFSWQG
NRTPPYAWRS WPQPEQRDAN GNLTRFAEDW LYTDEYGTNH GPLMLRFITE RGRAYRMVML
NTVPGCNTDM LSTISQLYFF TDPGANVAVE KQAPERASRN QMVGYSLTVR NTSQTTVNNV
VLTDTLPLGM PFGGADLTLR DPNTGETTTE RVTATVSLAP SWTDGRTLVW NLGNLAPGEV
RTIDLTVPAT DAAPDAATNV AVVSAANDGD PNDNRAEATT VFVRTNVRVR ITTPRIVRPG
QEFETVISYE NTSPEDATNV LLDYQVVPDV TIVGATPGHQ EMNNERPVWR LGTVAAGQRG
TVRVRVQVPP ADSPALPVAV LHLARISADA DADPMDNAAQ ATTTVLVVPP PQRGEERLRI
HSEFDPERGV YLSEGTTVTW PAGEVMDFTP FIAPDNRQVG LPYYRLDRKV VAWSFVGTGN
LNLIGATCKA REEPTAEDVQ HADLSRLKGC IYRYHVSPSS AQMRWQGHLF WGQYAPERMR
QDVYVRTPLP TRGTDLRIQY AVLTEAVETG YEDVDGDGRT DSVLERRTDV FEATYRVEFV
VPRDAR
|
|---|
| |