| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2117 |
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| Symbol | |
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| ID | 5209079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 2609691 |
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| End bp | 2610704 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640595719 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001276448 |
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| Protein GI | 148656243 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCGC TCCAGCATTC TGCCAGCATA CCGGTTCAGG CATTCGGCGA GCGTGAGGCG
CCAATCCGCG ATGCCGCAGC CCTGCTCGCC AGTCTCCGGC ATCTGGTCGA ACCGGATGAG
ATCGGGCTGG GCGTGCATCC TGTCGATGCA CTCCCACCGT TGTCACTCGA CGCAGCCTAT
CGGCAGTGTG TCGAGATCAC GCGCATCAAT TCGCGCAGTT TCTATCTGAG TTCGCAATTG
CTGCCGTTCG AGAAGCGCCT GGCGGTACGG GCGCTCTATG CGTTCTGCCG CACCAGCGAC
GATACGGTTG ATCGAGCGAC CGACGACCCG GCGCGCGCGC TGGCGCAATG GGTGGCGCGT
GTGCATGCGC CGCATCCCCC CGCCGATCAT CCGGTGCTGC TGGCATGGGA TGATACGGTG
CGACGGTATG CCATCCCGCA ATCCCTTGTC GATGAATTGC TCGCCGGTAT TGCGATGGAT
CTCACCTTCC ATCGATATGA GACGTTCGAT GATCTCTGGC TCTACTGCTA CCGTGTCGCG
TCGGTTGTTG GCTTGCTCTC GATGCATATC ATCGGTTATC GCGATGGCGC CGCTCCCTAC
GCTGTGAAAC TGGGTGTGGC GCTTCAATTG ACGAATATTC TGCGCGATGT TGGCGAAGAT
GCGCAGCGCG GGCGGATCTA TCTGCCGCAG GAGGATTTGC GGCGCTTTGA TCTGACCGAT
GATGATATTC TTCAGGGACG GCGCGACGAA CGCTTCCGTG CTTTGATGCG TTTCGAGATC
GAGCGTACCC ATGCGCTGTA CGATGAAGCC TGGCCCGGTA TCGCCCTGCT CGATCCGGAT
GGTCGCATGG CGATCGCGGC GGCGGCGGAG ATTTATCGCG GCATCCTGCC GCGCATTGTT
GCGAATGACT ACGACGTGTT CCAGAAACGC GCCTATGTTC CGCTCGCAGG CAAACTGGCT
ATCCTCTGGC GCACGTACCG CAGACTCAAC CGCCTGATCA GAGATAGCCG GTAG
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| Protein sequence | MASLQHSASI PVQAFGEREA PIRDAAALLA SLRHLVEPDE IGLGVHPVDA LPPLSLDAAY
RQCVEITRIN SRSFYLSSQL LPFEKRLAVR ALYAFCRTSD DTVDRATDDP ARALAQWVAR
VHAPHPPADH PVLLAWDDTV RRYAIPQSLV DELLAGIAMD LTFHRYETFD DLWLYCYRVA
SVVGLLSMHI IGYRDGAAPY AVKLGVALQL TNILRDVGED AQRGRIYLPQ EDLRRFDLTD
DDILQGRRDE RFRALMRFEI ERTHALYDEA WPGIALLDPD GRMAIAAAAE IYRGILPRIV
ANDYDVFQKR AYVPLAGKLA ILWRTYRRLN RLIRDSR
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