| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2028 |
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| Symbol | |
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| ID | 5208990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 2514921 |
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| End bp | 2518664 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640595634 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001276363 |
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| Protein GI | 148656158 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.138072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCGG TCGCAGCACC GCAGGAACAG GGGCGTCTGG CAGACCATGA CGCACACATC
AGACGCACAG TTTTGTGTCA ATCGGTCGAG TCGGCGCCGT GGCCCACACT CCTGATCGAT
TCTACTGACG CTATCGTGGC AGTGAGTCCG TCCACGCAGC ACATCACGGG CGTGACCGGC
GGCGCTCCTG CATATTCCAT TCTACCCGAC AGCGCCGACG AGCAAACTCG AACCCGCTTC
GAGCAGACGC TTGAGTTCGC GCGCGCCAAT CATCCCGGCG ATCCCTTCGT GTTCCGGCGA
TCCGATTGCT CAGATATCGA AATCGAAGCG CTTCCAGTAT CGATCAACGG CACGGGATGG
CTCTCGGTCA ACCTGTACCA GGTATCGCGC GCAGCAGTGC TGCAACGGTT GATCGCCTCG
CTGCGTCAGC GCCTGCACCA CCTGCACAGC GTGGCATCAC TCCGCGACGT ATGCACCCAG
GTGAGCGCGT TGCTTCTCCC GGCAGGGATG GGGATCACGG TCTTTGAACA CAGGCAGCCT
GACGCATTGC CTGTCCCGCT CTATGCCACG CCTCCGCTCG ATAAGGTCGC CTTTGATCAG
GCAACGCTCG CGCTGATCGT CCAGCGACGT CTTCCTCTGT TTCTGTCTGA TATTGCGCCC
GAAACGCTCA ACGACATCGC CCGCGCAACA GGTGTGCGCG GGCACATTGT TCTCCTGCTG
CCGGAAACCG GCGACCGTCA GCACATTCTG CACCTGTGGG GAAGCAGCGT CGCGGCGGAA
GAACAGGAAC AACTGGAAAC GATCGCCCTG CACCTGGCAT CGCTCCTGGC GCATATCATC
GAGCGTGAAC AGGCTGCACA CCGTCGGCGA CGTCTCGATG CGCTCTCCGA CGCCGCCCGG
ACGATCGTAT CTCTCAGGTC GGTGGACGAT GTCCTGTACG AAATCTGTCG TCAGGCGACT
ATGCTGCTCG ACGTCGAGCA GGCTGGCATT TTTCTGCCGA CCGACGACCC CGCCATGCTG
GTATGCGCTA TGACCGCTGG CGCTGCGGAA CATCTCAAGG GCGAACCGAT TCCGCTGGTT
GGCAGCCTGG TGGGGCGGAC CTTCCGTGAA GGCATCCCCC TGGCATTTAC CAACGTCGAA
GCCGAGCCGG ACGTGTACCG TCCGTTCTGG GAAGCCCATC GGTTGTGCGC GGCGTTGTTT
CAGCCATTGC ACCATCGAGG GAGCGTCATC GGCGTGCTCA GCGTCGCGCG GCGCCTGCCT
ACATCCTTCG ATGATGACGA CCGGATGATC ATTCACCGCT TTGCCGAACT CGCCACTGCC
GCAGTCGCTA ATGCGCAACT GCATCAGGCG CTGGCGCACT CGGAACAACA TTACCGTCTG
TTGTTCGAGC AGGCGGACGA ACTGGTGCTG AGCCTCACAC CCGATGGATA CATTCGACGC
TGTAATCGTT CTGCTCACGC AGTTCTCGGC GCAACCCCCG GAATGTCGTT GTTCGACCTG
ATCGATCCCG CTGAACAGCA CGACATCCAG CAACGTCTGA ACGAGGTGCG TCTGCATCAG
CGCCTGCCCG CACCCTGGAT ATTCACAGCG CGCAGCCAGC AGGGGAAGGC GATTGTGCTG
GAAACGACGG CGCAGGTGAT CCAGATCGAT GCACATATGA TTGAGATCGA CCTGATCTGC
CGTGATATTA CCGCGCGCCG CGCCGCCGAG CACGAATTAC AACGGTTGAA TCTGGAACTG
ACGACATTGC TTCGTATCAA TCAGGAGTTG ACGCGCCTGA TCACCCTTGA CGACGTGCTG
GCTTCCGCAC TGAACATCAT TACCGGCGCA ATGCGCCTGC GGAGTGCGGC GATTGTGCTG
TACAATCCTG AAGGAGAACT GCACATACGC GCTATATCTG GTGCATCATC CCAGACGGCG
CAATGCATTG ATCGCCTGCT GGTTCATCTG TTCCCTGAAG AGCGGGAAGC CCTGGCAGGC
AGCACGTCCC CTACCGTGAT CGATATTGCA GCATTGCACG TGCAGACCCC TGACTTGCCC
GCTCTGCAGC GTCTGCCGCC AGAGGTGGCA TTCCTTGCGA TTGTGCCGTT GCAGATCGAA
GGAACAGTCA TCGGGTTGCT CGAACTGCTC AGCGAGACAA AGCCATTCCA GGCGCATGAC
GTGCAACTGG CGGAGGCGAT AGCGTTACAA CTGGCACAGG CGATCCGGAA TGCGCAGACC
ACCCAGGAGA TGCGCGAAAC GTCGCTGATG AATGCGCGCC TCTACCGCGA GGCGGAAGCG
ATGCGCGCCT ACCTCGACGC AATCATTCAG AATGCGCCCG ATGTGCTGAT CGTGTGCCGA
CCCGACATGT CGATGCAACC GCTCAATCAG GAGCCGTTGA CTCTGATCGG GTATCAGCGT
CACGAACTTG CCGGTCAACC GCTGTTGCGC ATTGTGCCGA CCGATCAGCG GGCGACGCTG
ACGCGCGCAT GGCTGGAGGT GCGACAGGGC GAATCGCAAC GGTTCGAGAT GAACCTGCTG
CGCGCCGATG CCAGTTATTT CACCGCGCTG GTGTCGCTGG ATCTGATCCC CGATTATGAC
GAAGTGCTGG TGGTCATCAA GGATGTGACC GAACTGCGCC GGCTGGAAGA ACAGGTGCGT
CAGCACGAAA AACTGGCGGC GCTCGGACGC CTGGTTGCTG GCGCAGCCCA TGAGTTGAAC
AATCCACTGG CAGTGATCCT GGGGCTCTCG CAGTTGCAAA TGGACGAGGA TATTCCGCCG
TCGATCCGCG CCGACCTGGA GCAGATCGAG CGGGCTGCGC GCCGCGCCGC AGCGATTGTT
CATCAACTAC GCGCCTTCGG GCAACCGCGT ACACTGGAAC CTGTTCCCAT CGATCTCTCA
CTGGTTATCG ATGATACGCT GCAACGCCTG GCTTCGCAGA TCGCTGCCGG GCAGGTGATC
GTGACGGTTG ATCTTCCCCC CGATCTCCCA AACGTTCTTG GCGAACTGCA TCAGATTGAG
CAGGTGGTTT TCAATATTGC GCTGAATGCC ATCCAGGCGC TTGCGTCACG TTTGCCCGAC
GAGCCGCGCC ATCTGCGCTT CAGCGCCAGA GCCGAACAGG AAAGTGTTGT GCTTGCAATC
GAAGACACCG GTCCCGGCAT TGCGCCAGAA CATCTGTCGC GCGTGTTCGA GCCATTCTTT
ACCACCCGCG ACGTTGGACA GGGGATGGGG ATGGGACTGG CAGTGGTCTA CAGCATTGTT
CAACAACACC GTGGCGAAGT ATGGGTCGAG AGTCGTCAGG GGGTTGGAAC GACGTTTTAC
GTCCGCCTGC CACGCGCCGA CGATGACCCC GCAACTGCCA ATCCGCCGAC CATCGCACTT
CCGCGTCATC TGTCGATCCT CCTGGTGGAA GATGACGATC TGGTGCGCAC CATGGCGCAG
CGCGCTCTGG AACGTCTCGA ATGTCGCGTT GACGCGGTGA GTAGAGGTGA AGAAGCATTT
GCGCGCGCAC TTGCCGCAGA TTACGATGTG GTGATGACCG ATCTTCAGAT GCCTGGCATG
GATGGCGTCG AACTGTATGA ACGTCTCCGT GCGCTCAGAC CGTCGCTGCG CTGGTTGATC
CTGACCGGCG ACACCATGGG GGAACGCAGC AGCCTGTTTC TCGAACGTAC CGGGCTGCCG
GTGCTGCACA AACCGTTTAC TCAGGATCAA CTGATCGAGC GACTCGCCGA GAGCCTGCAC
CACAATCCTT CTTCCCCGTT ATAA
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| Protein sequence | MPPVAAPQEQ GRLADHDAHI RRTVLCQSVE SAPWPTLLID STDAIVAVSP STQHITGVTG
GAPAYSILPD SADEQTRTRF EQTLEFARAN HPGDPFVFRR SDCSDIEIEA LPVSINGTGW
LSVNLYQVSR AAVLQRLIAS LRQRLHHLHS VASLRDVCTQ VSALLLPAGM GITVFEHRQP
DALPVPLYAT PPLDKVAFDQ ATLALIVQRR LPLFLSDIAP ETLNDIARAT GVRGHIVLLL
PETGDRQHIL HLWGSSVAAE EQEQLETIAL HLASLLAHII EREQAAHRRR RLDALSDAAR
TIVSLRSVDD VLYEICRQAT MLLDVEQAGI FLPTDDPAML VCAMTAGAAE HLKGEPIPLV
GSLVGRTFRE GIPLAFTNVE AEPDVYRPFW EAHRLCAALF QPLHHRGSVI GVLSVARRLP
TSFDDDDRMI IHRFAELATA AVANAQLHQA LAHSEQHYRL LFEQADELVL SLTPDGYIRR
CNRSAHAVLG ATPGMSLFDL IDPAEQHDIQ QRLNEVRLHQ RLPAPWIFTA RSQQGKAIVL
ETTAQVIQID AHMIEIDLIC RDITARRAAE HELQRLNLEL TTLLRINQEL TRLITLDDVL
ASALNIITGA MRLRSAAIVL YNPEGELHIR AISGASSQTA QCIDRLLVHL FPEEREALAG
STSPTVIDIA ALHVQTPDLP ALQRLPPEVA FLAIVPLQIE GTVIGLLELL SETKPFQAHD
VQLAEAIALQ LAQAIRNAQT TQEMRETSLM NARLYREAEA MRAYLDAIIQ NAPDVLIVCR
PDMSMQPLNQ EPLTLIGYQR HELAGQPLLR IVPTDQRATL TRAWLEVRQG ESQRFEMNLL
RADASYFTAL VSLDLIPDYD EVLVVIKDVT ELRRLEEQVR QHEKLAALGR LVAGAAHELN
NPLAVILGLS QLQMDEDIPP SIRADLEQIE RAARRAAAIV HQLRAFGQPR TLEPVPIDLS
LVIDDTLQRL ASQIAAGQVI VTVDLPPDLP NVLGELHQIE QVVFNIALNA IQALASRLPD
EPRHLRFSAR AEQESVVLAI EDTGPGIAPE HLSRVFEPFF TTRDVGQGMG MGLAVVYSIV
QQHRGEVWVE SRQGVGTTFY VRLPRADDDP ATANPPTIAL PRHLSILLVE DDDLVRTMAQ
RALERLECRV DAVSRGEEAF ARALAADYDV VMTDLQMPGM DGVELYERLR ALRPSLRWLI
LTGDTMGERS SLFLERTGLP VLHKPFTQDQ LIERLAESLH HNPSSPL
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