| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2008 |
|---|
| Symbol | |
|---|
| ID | 5208970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2489678 |
|---|
| End bp | 2491396 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640595615 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_001276344 |
|---|
| Protein GI | 148656139 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00291083 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00122076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACAT CTCGATTGTC CGCACGCAAC AAACGCTGGC ACATTCTCGA AACGCCGCCG
GAGTTCATCG CCGCCTGTCG CGCATTGCCG CCGTTGATCG CGGCGTTGCT GTATCAGCGC
GGGGTGCGCA GCGATGCTGC GATGCGCGAG TTCTTCAGCG CCGACTATCG CCTGAACGAT
CCTTTCAGCA TGCGCGGGAT GGAGACCGCG GTGCAACGTA TCGCCGCAGC CATTCACGAT
CACGAGTTGA TGGCGGTGTA CGGCGATTAC GATACCGACG GCGTGACCGC AGTGACGCTG
CTGGTGCAGG CGATCAGCGC CATGGGCGGG TTGATTCTGC CCTATGTTCC ACACCGCATC
CGTGAGGGGT ATGGCTTGAA TATCGAGGCC ATCGATGCGC TTGCCCGTGA AGGGGTTCGC
CTGCTGATCA CCGTCGATTG CGGCATCAGC AATGTACGCG AAGCCGCCCA TGCGCGCGCG
GTTGGCATCG ATCTGATCAT TACCGATCAT CACCATCCCC CCGCTCGCCT GCCGGATGCG
GTGGCGATCA TCAATCCCCG CCAGCCGGGG TGTTCCTATC CGTTCAAACA TCTGGTCGGC
GTCGGGATCG CCTTCCAGCT GGTGCGCGCA CTGGCGCGAC GCGGGTTCCG TTCTACCCTG
CAAAAGGACG ATCTCCTCGA TGTGGTCGCC CTCGGCACGG TGACCGATAT GGGTCCGCTG
ATCGGCGAGA ATCGCGTGCT GGTGACGCAC GGGCTGAAGG CGCTCAATGC GGCGCAGCGA
CCAGGGGTGC GCGCACTGAT CCAGGCTGCC GGCATGACTC CCGGCAGGGT GACCTCGACC
GACATCAGTT TCGGGTTGGG ACCGCGGTTG AATGCGTCCG GTCGCATCGA TAACGCGCGA
TTGAGTTATG AACTGTTGCT TGCAGAAGAG TTCGAGACGG CGCAACGCCT GGCGCACGAA
CTGAATCTTC AGAACCGTCA GCGCCAGGAG TTGTCGAAGA CGGTTCACGA ACAGGCCAGC
GCCCAGATTC AGGCGCTCGG CAAACAGAAC CAGCGGCTGA TCATCCTCGA TGGAACCGAT
TACCCCGCCG GTGTGGTCGG TCTGGTGGCA GCGCGTCTGG TCGAGGAGTA TGGGCGCCCG
ACGGTGCTGA TTGAACGCGG TGAGCAGTGG TCGCGCGGTT CGGCGCGCTC GGTGCCCGGA
TTCAGCATTA TCGATGCGTT GACCGACTGC GCCGATCTGT TCGAGCGTTT CGGCGGGCAT
ACCGAAGCAG CCGGGTTTAC CATCGCCACC GATCGGTTGC CGGCGCTTGA AGACCGCCTG
CTCCGCTATG CCGCAGAGCA TCTGAGCGAT GATCTGTTGA TGCCAGGGAT CACTATCGAC
GCCGAAGTTC CGCCAGCGTC GTTGTCGTAT GAATTGCTGG GGGAACTGGC AAAACTCGAA
CCGTTTGGGC ACGGGAATCC GCAACCGGTG TTGATGAGCC GACGCTTGCA GGTCACCGGT
GCCTGGCCGC GCGGCAGCGA GGGACAGCAC CTGAAACTCC GGTTGGTCGG CGCCGATGGC
AGTGGACCCT TCGACGCAAT TGCGTTCCGT TTCGGGCATC TGGCGCGCTA CTTCGAGCAG
CCACGCTGGA TAGATATTGT CTACACGCTC GAAGCCGATG AGTGGAACGG AAGCCCTTCA
CTTCAGTTGA ATGTCAAAGA TTTCAGGAGC GCGCGGTAA
|
|---|
| Protein sequence | MSTSRLSARN KRWHILETPP EFIAACRALP PLIAALLYQR GVRSDAAMRE FFSADYRLND
PFSMRGMETA VQRIAAAIHD HELMAVYGDY DTDGVTAVTL LVQAISAMGG LILPYVPHRI
REGYGLNIEA IDALAREGVR LLITVDCGIS NVREAAHARA VGIDLIITDH HHPPARLPDA
VAIINPRQPG CSYPFKHLVG VGIAFQLVRA LARRGFRSTL QKDDLLDVVA LGTVTDMGPL
IGENRVLVTH GLKALNAAQR PGVRALIQAA GMTPGRVTST DISFGLGPRL NASGRIDNAR
LSYELLLAEE FETAQRLAHE LNLQNRQRQE LSKTVHEQAS AQIQALGKQN QRLIILDGTD
YPAGVVGLVA ARLVEEYGRP TVLIERGEQW SRGSARSVPG FSIIDALTDC ADLFERFGGH
TEAAGFTIAT DRLPALEDRL LRYAAEHLSD DLLMPGITID AEVPPASLSY ELLGELAKLE
PFGHGNPQPV LMSRRLQVTG AWPRGSEGQH LKLRLVGADG SGPFDAIAFR FGHLARYFEQ
PRWIDIVYTL EADEWNGSPS LQLNVKDFRS AR
|
|---|
| |