| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1974 |
|---|
| Symbol | |
|---|
| ID | 5208936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2454980 |
|---|
| End bp | 2455966 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640595582 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001276311 |
|---|
| Protein GI | 148656106 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00168317 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.460832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTA TGCTCAACAC GATACATCTG CAAACATTTC TGGCAGTGGT CGAAACCGGA
AGCTACAGCG CTGCGGCAGA ACGTCTCCAT CTGTCTCAAC CGGCTGTAAG TAATCACATA
CGAGCACTCG AAGCGCAACT TGACCAGGTG CGCCTCTTTC GACGGGTCGG GCAGCAGATG
CTGCCAACCC ATGCTGGCGA AGAACTGGTT GCAGTCGCGC GCGAAATGCT GGAACTGGCA
ACGCGCGCAG AAGAGCACAT CCGCAGCCTG CGTGGTCAGA TTGGCGGTCG GGTGATGATC
GGCTGCACAC CCGCAGGCGC AGAAGCGCTG CTCTCGCGAA TACTCAAAGC ATTTCACGAG
CGGCATCCGG CAGTGAGTCT TGCCGTCAGC GTCGCCCTGC CTGAGATCCT GCTCGACCGA
CTCGCCCGCC AGCACATTCA CATCGCGCTG ATCGAGGAAA AGCAGAGCCC CCGCAGCTGG
ATCGTGCAAC TCCTCGGCAG TGAGCCGCTT GAACTGATTG CGCCGCGCAC CCATGAGATC
ACGCACCGTG GGTTGATAAC GCCAGACGCG CTCCGCCATT TTCCGCTGAT CATGCCGCTC
AACGGGAGTG CTGCGCGGCG CCTTATCGAA GAGCGGCTCC GCTCAGGCAA ACCGGCGCGT
ACCGACATTA ACATTGTCCT GGAGACCGAC AGTGTTACTG CGGCGATCGA AGCGGTTCGC
AACGGGCTCG GGATGGCGTT TGTCCCACGA TCCTGTCTGA CGCATCACTC TGATGTCAGC
ATCGTGCCGG TCGATGGGCT GAATCTTCAG CAGGAATGGT TTGCACTCCG CGCGCGTGAA
CAAACCACAT CGCGCGCCGT GCAGGAGGCA TTTGCCTTCC TGACCGGTCC GGATGTTCGC
ACCATTCTGC ACCATGCTGG CATTCAATCG CCGCTGGAGA CGAAAACACG GGACAAGATC
GCAAAAACGG AAAGGAGACG TTCGTGA
|
|---|
| Protein sequence | MNAMLNTIHL QTFLAVVETG SYSAAAERLH LSQPAVSNHI RALEAQLDQV RLFRRVGQQM
LPTHAGEELV AVAREMLELA TRAEEHIRSL RGQIGGRVMI GCTPAGAEAL LSRILKAFHE
RHPAVSLAVS VALPEILLDR LARQHIHIAL IEEKQSPRSW IVQLLGSEPL ELIAPRTHEI
THRGLITPDA LRHFPLIMPL NGSAARRLIE ERLRSGKPAR TDINIVLETD SVTAAIEAVR
NGLGMAFVPR SCLTHHSDVS IVPVDGLNLQ QEWFALRARE QTTSRAVQEA FAFLTGPDVR
TILHHAGIQS PLETKTRDKI AKTERRRS
|
|---|
| |