| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1939 |
|---|
| Symbol | |
|---|
| ID | 5208900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2405092 |
|---|
| End bp | 2406525 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640595547 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001276277 |
|---|
| Protein GI | 148656072 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.207274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.576775 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGCGCCA GGAAGGAGTC GCTTGTGGCA ACGCCATTAA CCGCCCGCTC ACCCTGGCAT
GTGCTTACCG TCACCAGCCT GGCAGTCTTC GCCGTGTTGC TTGATAGTCT GGTGCTGGTG
GTGGCCTTCC CGGACATCGA ACGCAGTTTC CCCGCCGTCT CTGCCACCGC GCTCTCCTGG
GTGCTCAACG CCTACACGAT CATCTACGGC GCACTGTTGG TTCCTGCCGG GCGTCTTGCC
GACCGAATCG GACGCCGCCG GACCTTTCTG CTCGGTGTGA CGCTGTTCAC GACGGCCTCA
GTCCTGTGCG GACTGGCGCT GTCACCGGGG TGGCTGGTCG CGCTGCGAAT GGCGCAGGCG
GCAGGTGGGG CGCTCCTCTC GCCAGCTGCG CTGGCCCTCA CGCTTGCCGC CTTCCCACCA
GAGCGACGGA CCCTCGCGGT GGCGCTCAAT GGCGCAGTTG GCGCCCTGGC AGTCGTGGCC
GGGCCACCCC TTGGCGCGCT GATCGTACAG ACGGTCGGCT GGTCGGGGAT CTTTTTTCTC
AACCTGCCAA TCGGGCTGCT GGCGCTCGTG GTTGGGTGGC GTGTGCTGGC GGAATGGCGC
GAGCCGACCA CTGCCTGGCC TGACGGGTTG GGGGTGACCC TGCTCATCGT CGGTGTCGGT
CTACTGACTG GCGGGCTGGT GCAGAGCGAA GCCTGGGGTT GGTCATCGCC AGCAGTGCTC
GCCATGCTGG CCGTCGGGGC CACGGTGCTG GGCGGCTTTC TACGTCGTGC GCAGCGGGTG
GCCGTCCCGG TGCTGGATCT CGCGCTATTC GCAAGCGGCC CGTTCCGCCG GGCGAATCTG
GCCAACACGT TGTTCGGCGT AGCCTTCACC GCAATGTTCT TCGGCTCGGT GTTCTTCCTG
ACCCGGATTT GGGGCTTTAG CCTCGTCCAG GCCGGGCTGG CGATCACCCC GGGACCGCTC
ATGGTAGTCC TCGGGGCGCC GCTGGCGGGG CGGCTCGCAA GCCGCTGGGG ACATCGGCGC
CTGCTGGTCG TCGGCGGCCT GCTCTACGCC GCTGGCGCCC TGGTGCTGCT CATTGGGGCT
GGTCCGACGC CGCAGTTTCT TGTCCGCTGG CTGCCAGCAA TGGTGCTCAC TGGCCTGGGC
GTCGCCCTGA TCATCCCGCT GTTGAGCGGC GCGGCCGTGC AGGGACTGTC CCTGGCGCAA
CTCGCGACCG GCAGCAGCGT GGTGCAGGCC CTGCGCCAGT TCGCCAGTGT GCTCGGGGTC
GCGCTGACCG TGCTGTTGCT GGGCGACGGG GTGCTGACAG CCGTGTCCTT CGCGCCGATC
TTCGGCTTGA TGCTCGCGGG TGGATTGGTG GTGAGCGCGA TCAGCGCCGG ACTGCCGCAG
GTAGTCGTGC CAGCTCGCAA GGAGGGCGCC TCGGACTACG AGCCTGTCGT GTGA
|
|---|
| Protein sequence | MCARKESLVA TPLTARSPWH VLTVTSLAVF AVLLDSLVLV VAFPDIERSF PAVSATALSW
VLNAYTIIYG ALLVPAGRLA DRIGRRRTFL LGVTLFTTAS VLCGLALSPG WLVALRMAQA
AGGALLSPAA LALTLAAFPP ERRTLAVALN GAVGALAVVA GPPLGALIVQ TVGWSGIFFL
NLPIGLLALV VGWRVLAEWR EPTTAWPDGL GVTLLIVGVG LLTGGLVQSE AWGWSSPAVL
AMLAVGATVL GGFLRRAQRV AVPVLDLALF ASGPFRRANL ANTLFGVAFT AMFFGSVFFL
TRIWGFSLVQ AGLAITPGPL MVVLGAPLAG RLASRWGHRR LLVVGGLLYA AGALVLLIGA
GPTPQFLVRW LPAMVLTGLG VALIIPLLSG AAVQGLSLAQ LATGSSVVQA LRQFASVLGV
ALTVLLLGDG VLTAVSFAPI FGLMLAGGLV VSAISAGLPQ VVVPARKEGA SDYEPVV
|
|---|
| |