| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1931 |
|---|
| Symbol | |
|---|
| ID | 5208892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2395733 |
|---|
| End bp | 2397358 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640595540 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_001276270 |
|---|
| Protein GI | 148656065 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.126366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0171494 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGC AACCGGCCGA ATATCTCTGG TGGCAGCGCG GGGTGATCTA TCAGATCTAT
CCGCGATCAT TCCAGGACAG TAATGGCGAT GGGGTTGGCG ATCTGCGCGG CATTCGCTCC
CGACTCGATT ATCTGGTCGA TCTGGGAGTT GATGCAATCT GGCTCTCTCC TATCTTTCCT
TCGCCCATGG CCGATTTCGG CTACGATGTG TCCGATTACT GCGATATTCA TCCCCTCTTT
GGCACACTCA CCGACTTCGA CACCCTGGTT GCCGATGCCC ATCGACGAAA TCTGAAGGTC
ATTCTCGACT TCGTGCCAAA CCACACATCG GATCAACATC CCTGGTTCAT CGAGTCGCGC
AGTTCGCGTA GCAACCCCAA ACGTGACTGG TACATCTGGC GCGACCCGGC GCCGGATGGC
GGTCCGCCGA ACAACTGGCT CTCCTATTTT GGCGGATCGG CGTGGGAGTA TGATGCAACT
ACCGGTCAGT ACTATCTCCA CCTCTTCCTC AAGGAACAAC CTGACCTGAA CTGGCGCAAT
CCGCAGGTGC AGGCGGCAAT GCTCGACGCC ATGCGCTTCT GGCTCGACCG CGGCGTGGAT
GGATTTCGTG TCGATGTCAT GTGGCTGATG ATCAAGGACG ATCAGTTCCG CGATAATCCT
CCCAACCCTG CCTGGAAACC CGGCATGATG CCGCATATGA GACTGCTCGA AACCTACTCC
GCCGACCAAC CGGATGTTCA CACCATTGTT GCGATGATGC GCCGGGTGCT CGATTCATAC
GATGAGCGGA TGATGGTCGG TGAGATCTAC CTGCCGTATG ATCGCCTGAT GCGCTATTAC
GGAACCCCCG AAGCGCCTGA AGCGCACCTG CCGTTCAACT TTGCACTCGT GCTGCTGCCA
TGGGATGCGC AAACCATCGC GCAGACGATT GCACTGTACG AAGCGCTGCT CCCACCTTTT
GCCTGGCCCA ACTGGGTGCT TGGGAATCAT GATCAACCCC GCATTGCCAG CCGGGTCGGT
GAGGCGCAGG CGCGCGTCGC TGCCATGCTG TTGCTGACGC TGCGCGGCAC GCCGACGATC
TACTACGGTG ATGAGATCGG GATGCACAAT GTGCCGATCC CGCCCGACCG CGTGCAGGAC
CCGTTTGAGA AGAATGTGCC AGGTGAAGGG CATGGCCGCG ATCCGCAGCG CACGCCGATG
CAATGGGATG CCAGCGAGTA CGCCGGCTTC AGCAAAGTTC AACCCTGGCT GCCGGTCGCC
GATGATTACC GGCAGCGCAA TGTGGCGACA CAGCGCAACG TGCCGCACTC CATGCTCTCG
CTCTATCGCC GTTTGCTGGC GCTGCGCCGC TCCGAGCCAG CGCTGTCGAT CGGTTCGTAT
CAGGCGGTGA CGGTCGAGGG AGATGATGCC GCACGACAGT CGGTGCTGGC ATTCATACGC
GAAGCGGATG GCTGTCGCTT TCTGATCGCC CTCAACCTTG CATCGCATCC GGCGCGGATG
AACCTTTCTG CCATCGGCGA AGGAACGATT GCACTCTCGA CCCATCTCGA CCGCGGCGGC
ATCACTGTCC GCGACTCTCT GGAACTGCGC GCAGATGAAG GGGTGGTTGT GGCGCTTGCG
TCTTGA
|
|---|
| Protein sequence | MATQPAEYLW WQRGVIYQIY PRSFQDSNGD GVGDLRGIRS RLDYLVDLGV DAIWLSPIFP
SPMADFGYDV SDYCDIHPLF GTLTDFDTLV ADAHRRNLKV ILDFVPNHTS DQHPWFIESR
SSRSNPKRDW YIWRDPAPDG GPPNNWLSYF GGSAWEYDAT TGQYYLHLFL KEQPDLNWRN
PQVQAAMLDA MRFWLDRGVD GFRVDVMWLM IKDDQFRDNP PNPAWKPGMM PHMRLLETYS
ADQPDVHTIV AMMRRVLDSY DERMMVGEIY LPYDRLMRYY GTPEAPEAHL PFNFALVLLP
WDAQTIAQTI ALYEALLPPF AWPNWVLGNH DQPRIASRVG EAQARVAAML LLTLRGTPTI
YYGDEIGMHN VPIPPDRVQD PFEKNVPGEG HGRDPQRTPM QWDASEYAGF SKVQPWLPVA
DDYRQRNVAT QRNVPHSMLS LYRRLLALRR SEPALSIGSY QAVTVEGDDA ARQSVLAFIR
EADGCRFLIA LNLASHPARM NLSAIGEGTI ALSTHLDRGG ITVRDSLELR ADEGVVVALA
S
|
|---|
| |