Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1876 |
Symbol | |
ID | 5208836 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 2328060 |
End bp | 2329493 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640595484 |
Product | type II secretion system protein E |
Protein accession | YP_001276215 |
Protein GI | 148656010 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTAC TGAAACGAAT TGGCGGTTCC CAACCGCAAT CAACCGAGCC TTCCACCGCC GTAAGCGCGC CGACAGGTGC GCCAGCGAGC GCGCCGGACA ACGCAGCGAC GCCGCGTGCG ACAGTGACCT CGTCCGGCGG TGACGTGTCG CAGCAGCGGA TGCTGGAACT GTCGCTCTGG ATTGTTGATC GCATTCTGAG TTCGCTCGGC AATCAGCAGG AACTCAAGCG CTCCCCCGAA ATGGAGCGGC AACTCCAGGA AAAATTCACT CTGGCGTACC GGCAGAGCGG CGTGAACCTG ACCGATGAGC AAACCAGGCA ACTCTACGAT ATGGTGATGG ACGAGTTGTT CGGGTTCGGA CCTATCGAGC CGCTGCTCCG CGACGACAGC ATCTCTGAGG TGATGGTGAA CGGACCGCGT TCGGTGTATG TCGAACAGAA GGGCAAACTG ACCCTGACGT CGGTGCGATT CGCCAACGAT GAGCATGTGT TGAAAGTCAT CGACCGCATT ATTCGCCCGT TGGGGCGACG CATCGACCGC AAGTGGCCGA TGGTGGACGC GCGCCTCCCC GATGGTTCGC GCGTCAATGC GATCATTCCG CCGTGCGCCA TCGATGGTCC GTCGATCACC ATCCGCAAGT TCGCCAAGAA GAAACTGACG GTCGAGGACC TGATCCGCTT CGGCTCGATG ACGCCCGAAA TGGCGGAGTT CCTGCGCGCG TGCGTCGTCA GCCGCCTGAA CATTATCGTC GCCGGAGGCA CCGGCTCCGG TAAAACGACG TTGCTCAATG TTCTGTCGAA CTTCATCCCA CCCGACGAGC GCATTGTCAC GATCGAAGAC AGCGCAGAAT TGAAACTGGC GCAGGAACAT GTGGTGCGGC TCGAGTCGAA ACCGCCGGAG ATCGATGGCA CCGGGCGCGT GACGATCAAT GACCTGGTGA TCAACTCGTT GCGTATGCGC CCGGAACGGA TCGTTATCGG CGAGTGCCGC GGCGGCGAAA CCATGGCGAT GCTCCAGGCA ATGAACACCG GTCACGACGG TTCGCTCTCG ACCCTGCACG CCAACTCGCC GCGCGACGCA ATCGCCCGTA TGGAGACGAT GGCGATGATG GCGGGGATGG ACATACCGCT GCGGGTCATC CGTGAGCAGA TCGCTTCCGC AATCGACCTG ATCGTGCAGC AGACTCGCCT GGAAGATGGA AGCCGTAAAA TCGCCTACAT CACCGAGGTG CAGGGCATGG AAGGCGATGT GGTGGTGTTG CAGGATATTT TCGTCCTCCA GATTCTCGGC AAGACGCCTG AAGGCAAGAT CATCAGCGAA CTGCGTCCCA CCGGCACACG CCCGCGCTTT ACGCCGCGAC TCGAAGCGCA TGGTTTCAAA CTGCCGCCTT CGATCTTCGG CGCTACTGTT CCTGGCCAGA AGCGTCCGTG GTAA
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Protein sequence | MSLLKRIGGS QPQSTEPSTA VSAPTGAPAS APDNAATPRA TVTSSGGDVS QQRMLELSLW IVDRILSSLG NQQELKRSPE MERQLQEKFT LAYRQSGVNL TDEQTRQLYD MVMDELFGFG PIEPLLRDDS ISEVMVNGPR SVYVEQKGKL TLTSVRFAND EHVLKVIDRI IRPLGRRIDR KWPMVDARLP DGSRVNAIIP PCAIDGPSIT IRKFAKKKLT VEDLIRFGSM TPEMAEFLRA CVVSRLNIIV AGGTGSGKTT LLNVLSNFIP PDERIVTIED SAELKLAQEH VVRLESKPPE IDGTGRVTIN DLVINSLRMR PERIVIGECR GGETMAMLQA MNTGHDGSLS TLHANSPRDA IARMETMAMM AGMDIPLRVI REQIASAIDL IVQQTRLEDG SRKIAYITEV QGMEGDVVVL QDIFVLQILG KTPEGKIISE LRPTGTRPRF TPRLEAHGFK LPPSIFGATV PGQKRPW
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