Gene RoseRS_1876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_1876 
Symbol 
ID5208836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp2328060 
End bp2329493 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content60% 
IMG OID640595484 
Producttype II secretion system protein E 
Protein accessionYP_001276215 
Protein GI148656010 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTTAC TGAAACGAAT TGGCGGTTCC CAACCGCAAT CAACCGAGCC TTCCACCGCC 
GTAAGCGCGC CGACAGGTGC GCCAGCGAGC GCGCCGGACA ACGCAGCGAC GCCGCGTGCG
ACAGTGACCT CGTCCGGCGG TGACGTGTCG CAGCAGCGGA TGCTGGAACT GTCGCTCTGG
ATTGTTGATC GCATTCTGAG TTCGCTCGGC AATCAGCAGG AACTCAAGCG CTCCCCCGAA
ATGGAGCGGC AACTCCAGGA AAAATTCACT CTGGCGTACC GGCAGAGCGG CGTGAACCTG
ACCGATGAGC AAACCAGGCA ACTCTACGAT ATGGTGATGG ACGAGTTGTT CGGGTTCGGA
CCTATCGAGC CGCTGCTCCG CGACGACAGC ATCTCTGAGG TGATGGTGAA CGGACCGCGT
TCGGTGTATG TCGAACAGAA GGGCAAACTG ACCCTGACGT CGGTGCGATT CGCCAACGAT
GAGCATGTGT TGAAAGTCAT CGACCGCATT ATTCGCCCGT TGGGGCGACG CATCGACCGC
AAGTGGCCGA TGGTGGACGC GCGCCTCCCC GATGGTTCGC GCGTCAATGC GATCATTCCG
CCGTGCGCCA TCGATGGTCC GTCGATCACC ATCCGCAAGT TCGCCAAGAA GAAACTGACG
GTCGAGGACC TGATCCGCTT CGGCTCGATG ACGCCCGAAA TGGCGGAGTT CCTGCGCGCG
TGCGTCGTCA GCCGCCTGAA CATTATCGTC GCCGGAGGCA CCGGCTCCGG TAAAACGACG
TTGCTCAATG TTCTGTCGAA CTTCATCCCA CCCGACGAGC GCATTGTCAC GATCGAAGAC
AGCGCAGAAT TGAAACTGGC GCAGGAACAT GTGGTGCGGC TCGAGTCGAA ACCGCCGGAG
ATCGATGGCA CCGGGCGCGT GACGATCAAT GACCTGGTGA TCAACTCGTT GCGTATGCGC
CCGGAACGGA TCGTTATCGG CGAGTGCCGC GGCGGCGAAA CCATGGCGAT GCTCCAGGCA
ATGAACACCG GTCACGACGG TTCGCTCTCG ACCCTGCACG CCAACTCGCC GCGCGACGCA
ATCGCCCGTA TGGAGACGAT GGCGATGATG GCGGGGATGG ACATACCGCT GCGGGTCATC
CGTGAGCAGA TCGCTTCCGC AATCGACCTG ATCGTGCAGC AGACTCGCCT GGAAGATGGA
AGCCGTAAAA TCGCCTACAT CACCGAGGTG CAGGGCATGG AAGGCGATGT GGTGGTGTTG
CAGGATATTT TCGTCCTCCA GATTCTCGGC AAGACGCCTG AAGGCAAGAT CATCAGCGAA
CTGCGTCCCA CCGGCACACG CCCGCGCTTT ACGCCGCGAC TCGAAGCGCA TGGTTTCAAA
CTGCCGCCTT CGATCTTCGG CGCTACTGTT CCTGGCCAGA AGCGTCCGTG GTAA
 
Protein sequence
MSLLKRIGGS QPQSTEPSTA VSAPTGAPAS APDNAATPRA TVTSSGGDVS QQRMLELSLW 
IVDRILSSLG NQQELKRSPE MERQLQEKFT LAYRQSGVNL TDEQTRQLYD MVMDELFGFG
PIEPLLRDDS ISEVMVNGPR SVYVEQKGKL TLTSVRFAND EHVLKVIDRI IRPLGRRIDR
KWPMVDARLP DGSRVNAIIP PCAIDGPSIT IRKFAKKKLT VEDLIRFGSM TPEMAEFLRA
CVVSRLNIIV AGGTGSGKTT LLNVLSNFIP PDERIVTIED SAELKLAQEH VVRLESKPPE
IDGTGRVTIN DLVINSLRMR PERIVIGECR GGETMAMLQA MNTGHDGSLS TLHANSPRDA
IARMETMAMM AGMDIPLRVI REQIASAIDL IVQQTRLEDG SRKIAYITEV QGMEGDVVVL
QDIFVLQILG KTPEGKIISE LRPTGTRPRF TPRLEAHGFK LPPSIFGATV PGQKRPW