| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1783 |
|---|
| Symbol | |
|---|
| ID | 5208742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2200312 |
|---|
| End bp | 2202036 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640595391 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_001276123 |
|---|
| Protein GI | 148655918 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5421] Transposase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0405623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA AACTCACCTT AACCCACGAG CGAGTTGATG ACATCCCTCT GCTGATCGGG
CTTGCGCAGA AATTGCACCT TCCCGAAGTT CTGGACCGCC ACCTGGGCCA CCACGGCAAC
CACCAGGGGC TGAGGAACGG CTGGCTGGCA ACGGTCTGGC TGGCCTCTAT CCTCTCGGAA
AGCGACCATC GCACGTCCAG CGGAGAAGAG TGGGCCGGGC AGCATCGCCA GACGCTGGAA
CGGTTGCTGG GGCAACCCAT TCGCCGTACC GAATTCAGTG ATGACCGGCT GGAGATCGTG
CTGCGCCGCC TGAGCCAGCA GGCCGCCTGG GAAGCCCTGG AGGCCGACCT GTGGCAGGCA
ACGGGAGACG TCGATGACCT GGACGTGACC AGCGTTCGCC TGGACAGCGC CACCACGTAT
GGCTACCATA CCCTGACGGA AGACGGGGTG ATGCAATACG GGCATAGTAA AGACCGCCGT
CCCGACTTGC CCCAGTTGAA ATTGATGGCC GCCGCAGCCG AGCCGTGGGG TCACCTGCTG
GCCTGCAATG TCCACCCCGG CCAGACCGCC GACGACCCGT TGTACCGCCC CCTCATCGCT
CGGGTGCGCC AGATGCTGGG CCGGTCGGGG CTGCTGTATG TGGGCGACAG CAAGATGGCT
GCTCTGGCAA CTCGGGCGGA CATCGTGGCC CACGGGGACT CCTACCTGAT GCCCCTGCCC
CTGACCGGCG AGACCGCCCA ACAGGTGGAA GCGTGGATTG ACGCCGTGGT GGAAGGGGAG
CAGACGGTGA CCCTGATCTG GGATGAGCAG AGTCTGTTGG GCGGCGGGTA TGAGTTTGAG
CGGCCGATGA GCGCTCGGGT GGACGGCAAG CCCGTGACGT GGACCGAGCG GGTGCAGGTG
GTCCGCTCGT TGGCGCTGGC GGAGCGGGAG AGCCAACCGT TGGAGCAGCG CCTGGCGAAC
GCGGAGGGTG CTCTGCGGGC GCTGACACCG CCCCCCGGTC GGGGCCGACG ACCGTATCGG
GACGAAGCGG CCTTGCAGAC AGCGGTATCC CAGGTGCTGG AGCGATATGA TGTGACGGGC
TTGCTGCAGG TCACCTGGCG ACGGGAGGAA GAGACCGTCA CGCGCTCCGT GGGACGCGGA
CGGGGAAGCC CGAAGCGCCC CGTCCGGACG GAGGTGCGCG TGCGTTGCGT CATCGCCGAA
GTCCGGCGGG ACGAAGAGGC GATTCAGCGC CGGAAATATC GTCTGGGATG GCGGATTCAG
GTGACCAGCC TGCCGTTGGC CCAGATGTCG CTGGCCCAGA CGGTTGTCCA TTACCGGGGT
GGGTGGTGTC TGGAAAGAGA TTTTCACCTG GTGAAGGATC GTCCCATCGG CATCCGCCCG
TTGTATGTGC GGCGGGATGA TCAGATTATC GGTCTGACCC GCCTGCTGAC GCTGGCGTTG
CGGCTGTTGA CGTTGATAGA AAGCCAGGTA CGGCGTGGGC TGGCCCAGGC GGGTGAGGTC
TTGAGCGGGC TGTACGAAGG TCAGCCTCGG CGGACCACCG ACCGGCCGAC GGGCGTACGC
CTGCTGAAGG CGTTTGCCCG GGCAGAGATT ACCCTGACCC GGATTGAGAT GGAGCCTCAG
GTGATGTGGC ATATCACGCC GCTCTCTGGT TTGCTGGAAC GAATCCTGGC GTACCTGGGG
CTCTCGGCAG TGCTCTACCA GCGCCTGGCA GAAAATTCAT CATAG
|
|---|
| Protein sequence | MAEKLTLTHE RVDDIPLLIG LAQKLHLPEV LDRHLGHHGN HQGLRNGWLA TVWLASILSE
SDHRTSSGEE WAGQHRQTLE RLLGQPIRRT EFSDDRLEIV LRRLSQQAAW EALEADLWQA
TGDVDDLDVT SVRLDSATTY GYHTLTEDGV MQYGHSKDRR PDLPQLKLMA AAAEPWGHLL
ACNVHPGQTA DDPLYRPLIA RVRQMLGRSG LLYVGDSKMA ALATRADIVA HGDSYLMPLP
LTGETAQQVE AWIDAVVEGE QTVTLIWDEQ SLLGGGYEFE RPMSARVDGK PVTWTERVQV
VRSLALAERE SQPLEQRLAN AEGALRALTP PPGRGRRPYR DEAALQTAVS QVLERYDVTG
LLQVTWRREE ETVTRSVGRG RGSPKRPVRT EVRVRCVIAE VRRDEEAIQR RKYRLGWRIQ
VTSLPLAQMS LAQTVVHYRG GWCLERDFHL VKDRPIGIRP LYVRRDDQII GLTRLLTLAL
RLLTLIESQV RRGLAQAGEV LSGLYEGQPR RTTDRPTGVR LLKAFARAEI TLTRIEMEPQ
VMWHITPLSG LLERILAYLG LSAVLYQRLA ENSS
|
|---|
| |