Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1765 |
Symbol | |
ID | 5208722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2181382 |
End bp | 2182116 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640595371 |
Product | MIP family channel protein |
Protein accession | YP_001276105 |
Protein GI | 148655900 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.459656 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATACCAC AAATCCGGTT TTCTGATCGC CCTCTGATCG GGACCATGCT GCTCGTTCTA CTTGGCGACG GTGTTGTCGC TAATGTGGTA TTGAGCAAGA CGAAGGGCAA CAGCAGCGGG TGGATTGTGA TCACCACGGC GTGGGCTTTG GCCGTCTTTG TCGGCGCCTA TTCCGTTGCG GCGATCAGCG GCGCGCACCT GAATCCGGCA GTGACCATCG GTCTGGTTGT CGCCGGCAAG TTTGAAGCAG CCATGGCGCC GATGTATATC GGCGCGCAGT TCATCGGTGC GTTTATTGGC GCTGTGCTTG TCTTCCTGCA CTACTATCCG CACTGGGCGG AAACCAGCGA TCCAGGGTTG AAACTCGCCG TGTTCAGCAC CGGTCCGGCG GTGCGCAGTG TGGCGTGGAA CCTGGTCAGT GAGATTATTG GGACGTTCGT TCTGGTCTTC GGTATTCTTG CCATTGATGG ACCGGTCATG AACAATGGCA GCTTCGGCGC GCTTGGAATT ATTCCGGTGG CCTTTCTGGT GTGGGTGATC GGTCTGTCGT TAGGCGGTAC GACCGGTTAT GCCATCAATC CTGCACGTGA CCTCGGTCCT CGTATTGCTC ACGCAGTGCT GCCCATCCCC GGCAAGGGGA GCAGCGACTG GGGATATGCC TGGATACCGG TTGTTGGTCC GATCATCGGC GGCGCCGTCG CGGCAGCGTT GTATGTTGCT CTGGGGGCTT TCTGA
|
Protein sequence | MIPQIRFSDR PLIGTMLLVL LGDGVVANVV LSKTKGNSSG WIVITTAWAL AVFVGAYSVA AISGAHLNPA VTIGLVVAGK FEAAMAPMYI GAQFIGAFIG AVLVFLHYYP HWAETSDPGL KLAVFSTGPA VRSVAWNLVS EIIGTFVLVF GILAIDGPVM NNGSFGALGI IPVAFLVWVI GLSLGGTTGY AINPARDLGP RIAHAVLPIP GKGSSDWGYA WIPVVGPIIG GAVAAALYVA LGAF
|
| |