Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1740 |
Symbol | |
ID | 5208697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 2146413 |
End bp | 2148632 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640595346 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001276080 |
Protein GI | 148655875 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.336236 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGAATG CTCCCGCTCT TCTTTCGCTC GATGGCGTCT GGAAACTGCT GCCGGTCGAC ACGTTTCGTC AGGGGTTTTA TCCGCCTGAT GATGATACCT GGTTGGCGCA GGAGATACCG GCGCACTGGC AACAGCACCC GCTGCTGGAA CGCTATGCGG GGTGTATGGT CTACCGGCGG CGGTTCACCC TGCCGGACGC GCCTGCCATC CCGCCGGATC AGTCCGCGCC GATCCGCTAT TTCCTGCGCT TCAACGGCGT TTTCTATTGG GCGCAGCCGT ACTTCAACGG CGTTGATCTG GGGCGCCACG AAGGGTACTT CGAGCCGTTC GAGCACGAGG TGACCGCCTG GATCGCTCCG GAGAATGACA TTGTCGTCGA GGTCGAATGT CCCGATGAGG TCAATAAGTC CGGCAAGCGC CTGATCACCG GCATCTTCTC GCACTGGGAC TGCATGGACC CGCTGGCGAA CCCCGGCGGC ATCTGGTTGC CGGTCGAACT GGTGAAGACC GGTCCAGTGC GTCTCCGTGA GGTGCTGCTT CAGACCGAGG CATCCGGCGA GTCGCTGGCG GAGTTGCGTT TTCGTGCGCT GTTCGATGCG CGCGCAGCGC GTGATGTCGT GTTGCGCTGG ACGTTTGCGC CGGTCAACTT CGCTGGCGCC GTGCAGACGA TTGAGCAGCG CCGCGCCCTG GCGGATGGAG CGCATGAGAT CGCTGGCGTT CTGCTGCTGA ACGATCCGCG TCTCTGGTGG ACCCACGACA TGGGTGCGCC GAACCTGTAT GCGGTGACGC TCGAAGTGCT CTGCGATGGG GTAGTCTCAG ATGCGCGCAC CTTCCGCTTC GGCATTCGCA CATTCGAACT GCACGACTGG ATACCCTATC TCAACGGAAC GCGCTTCTTT GTCAAGGGGA ACAACTATCC GCCGACCGAT GTGCGGATTG CAACCACCAC ACGCGAACGG TGTCTCGTAG ATCTCCGCCT GGCGCGCGAG TGTCATATGA ACATGCTGCG CGTCCATGGG CACATTGCGC ACCCGGCGCT CTACGACGCC GCCGATGAGA TGGGCGTTCT GCTCTGGCAG GATTTCCCGC TGCACTGGCT CTACCGTCGT GAAATCCTGC CCGAAGCGCG GCGTCAGGCG CGTGCCATGG TGCGCCTGCT GGGCAACCAT CCATCGGTCG CACTCTGGTG CATGCACAAC GAACCGGTGT ACGTCGTCGA TACGCGCGAC GAACGCCTGA TAACGCGCCT GCGCACCTAT GCATCGATGT TCATCTTCAG CTGGAACCGC GATGTGATGG ATAGCGAGTT GAAGCGCGTC GTCGAACGGG AAGATGGCAA ACGCCCGGTC GTGCGCTCAT CGAATGAGTT TCCCATACCG GGAATTCGCA AAGGAACCAG CACCCATTTC TACTACGGCT GGTACAAAAT CTATGGACGC CTCGAAGAGT GGGAGCCGCT GATCCGTCGC TTCCCGCAGT TGGTGCGCTT CGTCACCGAG TTTGGCGCCC AGAGTTTCCC GAATGTCGAG AGTTGCGTCA GATTCATGGA TGCCGACATC AGGCGCATCG ACTGGCAGCA TCTGGTTGAG CGCCACCAGT TTCAGGCGGA TATCATGGCG CACTGGTACG ACTGGCGCGC CGCCCGTTCG CTCGACGAAC TGGTGCAGAT GTCGCAGGAG TATCAAATCA AGATCAATCG CCATTATATC GACCGGTTGC GGTTGCGCAA ATATCGTCCA ACCGGCGGTA TTATGCCGTT TATGTTTCAC GATGCGAACC CGTCGGTTTC CTGGTCGATC ATCGACTACT GGCGGGCGCC GAAGCGATCA TATGATGCCA TGCGCATGGC GTTCAGTCCC CAGTATCTCT TCACCGTGCT GGAAAAAGAG TCGATCACGG TTGGCGAAGC CCTTGATCTG CCGGTGTATA TCGTCAACGA CGACCACCGT GACGATGTCG TTGCCATTAC CGCGCGCCTG ATCGGTCCCG ACGATGCAAC GCTGGCGTGT GTCGAGCGTT CGTTCACGCT TCCTTCCGAC TGTATGGCGA TGGAAGTTGA GCGTCTGCGT CTGATCCCGC CCGATCCCGG AACGTATCGC CTGGAGCTGA TCCTGCGGGG CAGCCGGGTG GAAACACTCG TCAACACCTA TCTCATTCAC GTTGCAAGCG CTCAGAAAGG AACCCTGTAT GCTCGACAAA GCTCAAGCCA TCGCTCCTGA
|
Protein sequence | MTNAPALLSL DGVWKLLPVD TFRQGFYPPD DDTWLAQEIP AHWQQHPLLE RYAGCMVYRR RFTLPDAPAI PPDQSAPIRY FLRFNGVFYW AQPYFNGVDL GRHEGYFEPF EHEVTAWIAP ENDIVVEVEC PDEVNKSGKR LITGIFSHWD CMDPLANPGG IWLPVELVKT GPVRLREVLL QTEASGESLA ELRFRALFDA RAARDVVLRW TFAPVNFAGA VQTIEQRRAL ADGAHEIAGV LLLNDPRLWW THDMGAPNLY AVTLEVLCDG VVSDARTFRF GIRTFELHDW IPYLNGTRFF VKGNNYPPTD VRIATTTRER CLVDLRLARE CHMNMLRVHG HIAHPALYDA ADEMGVLLWQ DFPLHWLYRR EILPEARRQA RAMVRLLGNH PSVALWCMHN EPVYVVDTRD ERLITRLRTY ASMFIFSWNR DVMDSELKRV VEREDGKRPV VRSSNEFPIP GIRKGTSTHF YYGWYKIYGR LEEWEPLIRR FPQLVRFVTE FGAQSFPNVE SCVRFMDADI RRIDWQHLVE RHQFQADIMA HWYDWRAARS LDELVQMSQE YQIKINRHYI DRLRLRKYRP TGGIMPFMFH DANPSVSWSI IDYWRAPKRS YDAMRMAFSP QYLFTVLEKE SITVGEALDL PVYIVNDDHR DDVVAITARL IGPDDATLAC VERSFTLPSD CMAMEVERLR LIPPDPGTYR LELILRGSRV ETLVNTYLIH VASAQKGTLY ARQSSSHRS
|
| |