| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1738 |
|---|
| Symbol | |
|---|
| ID | 5208695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2144345 |
|---|
| End bp | 2145742 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640595344 |
|---|
| Product | aminotransferase class-III |
|---|
| Protein accession | YP_001276078 |
|---|
| Protein GI | 148655873 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.243066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.440114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTT CATCTTCAAA TACGCATATC TCTGTTGAAG CAGGCATTCC CGGACCGCGC
GCGATGGCGC TGATCGCCCG TGATCACAGG GTCTACGCTC CGTGTATGGG GCGGGTCTAC
CCCTTTGTGA TGGAACGCGG CATCGGGTGT GAGGTGTGGG ATGTCGATGG CAACCGTTAC
CTGGATTTCA ACGCTGGCAT TGCAGTCGTG TCCGCCGGGC ATGCGCACCC GCGGATTGTG
CGCGCCATTC AGGATCAGGC GGCGCGCTTC ATCCATATGG CAGCGACCGA TTTCTACAAC
GAGCCGATGA TCACGCTCGG CGAAAAACTG GTCGCCACCA TGCCGCGCGC GTATGACTGG
CAGGTGTTTC TGGCGAATTC GGGCACGGAG GCGGTTGAGG CGGCGATCAA ACTGGCGCGG
TATGCCACCG GTCGTCAGGG GATCATCGCC TTTTTCGGCG GATTTCACGG GCGCTCCTAC
GGCGCACTGT CGCTGACGGC GTCGAAACTG GTGCAGCGAC GCGGCTATTT CCCGCTGGTT
CCCGGTACGT TCCATGCGTT CTACGCCAAT CCCTACCGCC CGCCGTTCGA TGTCGATCCA
TCACGGGTGG CGGAAGCATG CCTGGCGTAC ATCGAAGATA CGCTGTTCCG CACGGTTGCG
CCGCCACGCG ACATTGCCGC CATCGTGGTC GAGCCGATCC AGGGCGAGGG CGGTTATGTC
GTTCCGGCGC CGGGTTTTCT CTGCGGATTG CGTCAGTTGT GCGACCGGTA CGGGATCGTG
CTGATCCTGG ACGAGGTGCA GAGCGGCGTG GGGCGCACCG GAACGATGTG GGCATTCGAG
CAGGAGTGCC CCGCGAATGC TGCCGGCGCC TGCGTTGCCT GTGGTCGCGC TCAACCGATC
GGATGCGTCC CGGATATTCT GGCGACTGCC AAAGGGTTGG GCGGCGGCGT GCCGATTGGC
GCAATTGTGG CGCGGAAAGA GTTGACCGCC GTGTGGGAAC CCGGTTCGCA CGGGAACACC
TTTGGCGGAA ACGCACTGGC GTGTGCTGCG GCGAACGAAG TGCTCGATCT GGTGCAGCAC
GAACTGGCAG CCAATGCTGC GCGCGTCGGC GCATATCTGA TGCAGGGGTT GCGCGACCTT
CAGCAGCGGT ACGACGTGAT CGGCGATGTG CGCGGGCGCG GTTTGATGAT CGGCATCGAA
CTCGTCAAGG ATCGGGAAAC GCGCGAACCG GCGCGCGCCC TGGCGCAGGG TGTGATGGAA
GAAGCATTCC GGCGCGGTTT GCTGATCCTG ACCTGCGGCG CATCAACGAT TCGCCTCTGC
CCGCCGCTGG TTCTGACCGA GGCGCAGGTT GATGAAGGAT TGACCATCTT CGAGGCAGCG
CTGCGCGCCT GCCTGTAG
|
|---|
| Protein sequence | MTLSSSNTHI SVEAGIPGPR AMALIARDHR VYAPCMGRVY PFVMERGIGC EVWDVDGNRY
LDFNAGIAVV SAGHAHPRIV RAIQDQAARF IHMAATDFYN EPMITLGEKL VATMPRAYDW
QVFLANSGTE AVEAAIKLAR YATGRQGIIA FFGGFHGRSY GALSLTASKL VQRRGYFPLV
PGTFHAFYAN PYRPPFDVDP SRVAEACLAY IEDTLFRTVA PPRDIAAIVV EPIQGEGGYV
VPAPGFLCGL RQLCDRYGIV LILDEVQSGV GRTGTMWAFE QECPANAAGA CVACGRAQPI
GCVPDILATA KGLGGGVPIG AIVARKELTA VWEPGSHGNT FGGNALACAA ANEVLDLVQH
ELAANAARVG AYLMQGLRDL QQRYDVIGDV RGRGLMIGIE LVKDRETREP ARALAQGVME
EAFRRGLLIL TCGASTIRLC PPLVLTEAQV DEGLTIFEAA LRACL
|
|---|
| |