Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1712 |
Symbol | |
ID | 5208669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 2105753 |
End bp | 2107198 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640595318 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001276052 |
Protein GI | 148655847 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATTC ATACGCCCGA CTGGGTCAAA CACGCTGTTT TCTATCAGAT TTTTCCCGAC CGTTTCGCCT GGAGCGCCCG GGTCGCCAAA CCGAACAACC TCCAGCCCTG GGACAGCCCT CCAACACCAG AAGGGTACAA AGGCGGCGAT CTGTTGGGCG TCGTCGAACG GCTGGATTAC CTGCAGGATC TGGGGATCAC GGCGATCTAC TTCACGCCGA TCTTCCAGTC CGCCTCGAAC CATCGGTACC ACACCCACGA CTACTATCAG GTCGATCCGA TGCTCGGCGG CAACCGGGCA TTCCGTGAGT TGCTGGAAGC GTGCCACCGG CGCGGCATGC GCGTCGTGCT CGATGGCGTC TTCAATCACG CCAGCCGCGG CTTTTTCCAG TTCAACGACA TTCTCGAAAA CGGACCCCAC TCCGCGTACC TGGACTGGTT CTTCATCGAG GGATGGCCCC TGCATCCGTA TGATGGCGCG CGCCCGGCAA ACTATCGCGC GTGGTTCAAC AACCGGGCGC TGCCAAAGTT CAACACCGAC AACCCGCAGG TGCGCGAGTT TCTCATGCAG GTCGCCGAGC ACTGGATCCG CCAGGGCATC GACGGCTGGC GACTGGATGT GCCGTTCGAG ATCACGACCG AAGGGTTCTG GCAGGAATTC CGCCAGCGGG TGAAAGCCAT CAACCCTGAA GCCTACATCG TCGGCGAGGT ATGGCGCGAT GCGCGCCAGT GGTTGCAGGG CGACCAGTTC GATGGCGTGA TGAACTATCT CTTCGCCGGA CCGACGATTG CCTACGCCGC CGGACCGCGC GTCGATCCGG CGCAGGTGGT CGGAAGGGAT TATGTCACAT CACCGCCGCT GACCGGTGCC GAGTATGCGC GGGTGATCGA CGACGTGGTG ACTCTCTACG ACTGGGAGAT CCAACTGACG CAGCTGAACC TGTTCGACAG CCACGACACG GCGCGCCTGC TGACCATCGC GCGCGGCGAC CGCAGCAGTG TGCGCCTGGC GACGATCCTG CTCATGACCT TTCCCGGAGC GCCGTCGGTG TTCTACGGAG ACGAAATCGG ACTGGAGGGA GGCGTCGATC CGGATGCCCG TCGCACGATG CCGTGGGATC GCCCGGAAAC CTGGGATATG GCGGCGCTGG CGTACCACAA GCGCCTGATC GAACTGCGTC ACACACTGCC AGCGCTGCGC ACCGGCACAT TCCATACGCT CTACGCCGAT GACGCTGTGT TCGCCTTTGC GCGCAAACTG GAAAACCAGA CGGTGATTGT CGTGGTCAAC AATGATGATC AACCGCGCCG CGTCTCCATC CCGGTCGCCG GTATGCTTCC CGACGGGCAC GACCTGATTG CTCGCTACGG CAACTACCGC AACCGTATCA TTCATGGTAC ACTTGAAGTA CAGGCGCCGG CTCGCGATGG ACTGATCCTG GCATGA
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Protein sequence | MTIHTPDWVK HAVFYQIFPD RFAWSARVAK PNNLQPWDSP PTPEGYKGGD LLGVVERLDY LQDLGITAIY FTPIFQSASN HRYHTHDYYQ VDPMLGGNRA FRELLEACHR RGMRVVLDGV FNHASRGFFQ FNDILENGPH SAYLDWFFIE GWPLHPYDGA RPANYRAWFN NRALPKFNTD NPQVREFLMQ VAEHWIRQGI DGWRLDVPFE ITTEGFWQEF RQRVKAINPE AYIVGEVWRD ARQWLQGDQF DGVMNYLFAG PTIAYAAGPR VDPAQVVGRD YVTSPPLTGA EYARVIDDVV TLYDWEIQLT QLNLFDSHDT ARLLTIARGD RSSVRLATIL LMTFPGAPSV FYGDEIGLEG GVDPDARRTM PWDRPETWDM AALAYHKRLI ELRHTLPALR TGTFHTLYAD DAVFAFARKL ENQTVIVVVN NDDQPRRVSI PVAGMLPDGH DLIARYGNYR NRIIHGTLEV QAPARDGLIL A
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