| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1637 |
|---|
| Symbol | |
|---|
| ID | 5208592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2008487 |
|---|
| End bp | 2009707 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640595243 |
|---|
| Product | PSP1 domain-containing protein |
|---|
| Protein accession | YP_001275979 |
|---|
| Protein GI | 148655774 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1774] Uncharacterized homolog of PSP1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.293382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTG TGGTCGGTAT TCGTTTTAAG GACTCAGGAA AGACCTACTA TTTCGATCCC
AATGGCATTG AAGCATTATC CCAGGGCGAC CACGTGATTG TCGAAACGGT ACGCGGCCCG
GAACTTGCAA AGGTCGCCTA TCCACCGCGA CTGGTCGATC CAGAAGAGAT CGTCGGTGAA
CTGAAACCGG TCCTCCGCCG CGCAGAACCG ATCGATTTCG AGCGTCTGCG CCAGTTGAAC
AGTCATCAGG ACGAATTGCT CGCCCGCTGC GCCGAAAAAA TCCAGGAACA CGGACTGCCG
ATGCGCCTGG TCAAAGCCGA GTATTCGTTC GACGGCTCGC GATTGACCTT CTACTTCACC
GCTGAAAAAC GCGTCGATTT CCGCGCCCTG GTGCGCGATC TGGCGCGCGC GTTTCGCACC
CGCATCGAAC TCCGCCAGAT CGGTCCGCGC GACGAGGCAA AACTCCTGGG CGGCATCGGT
CCATGCGGTC GCCTGCTCTG CTGCGCCACA TTCCTTCCCG ACTACGCGCG CGTGTCGATT
AAAATGGCGA AGGATCAGGA CCTCCCGCTG AACCCGACGA AGATCAGCGG AGTGTGTGGA
CGCCTGCTCT GCTGCCTTTC CTACGAACAT GATCAGTACG TGAGCGTCAA GAGCCGGATG
CCGCGCAAAG GCACATGGGT GCAGACGCCG GACGGACCGG GTGAGGTAGT GGGGGTCAAT
GTGCTGCGTG AGACGGTGAT CGTTGCGCTT GCCAGCACCG GGATGCAGGA AGAATTTTCA
CCGACGCAGA TTCAGGAAGC TATCCGTCAG GTCGGCGAGA TTGCGCGCAG TCGCAATGCC
GAGGGGATCA CGCCAGCTGC CAGATTGAAC CGCTCAGAAC GTCGCGCTGA ACAGGAACGG
CGGGGCGAAA AGCGGCTGTT GCGCGACTCG ATCGATAATC CAGACGTGCT CGAGGCGCTG
GCCTGGCTCG AAGAAGGCGC CGGTGATCCG CCGCTCGAAC TGCTCGAAGA GGAAGACCTC
GATATGCTGT CCGACGATCT GCCCATGGTT CCCCAACCAT CGAAGCGTTC GGCTGCTCCG
CCATCACCAA AGAAATCCGC CGGGCATCAT CACGATTCCG GGACGCGCAC CGACGAGAGG
ACGCCATCCG CGCCAGACAC TGCATCGCAA TCATCCACGT CGCAGCGGCA GCGTCGCCGT
CGCCGACCTC GCAATTCTTG A
|
|---|
| Protein sequence | MPVVVGIRFK DSGKTYYFDP NGIEALSQGD HVIVETVRGP ELAKVAYPPR LVDPEEIVGE
LKPVLRRAEP IDFERLRQLN SHQDELLARC AEKIQEHGLP MRLVKAEYSF DGSRLTFYFT
AEKRVDFRAL VRDLARAFRT RIELRQIGPR DEAKLLGGIG PCGRLLCCAT FLPDYARVSI
KMAKDQDLPL NPTKISGVCG RLLCCLSYEH DQYVSVKSRM PRKGTWVQTP DGPGEVVGVN
VLRETVIVAL ASTGMQEEFS PTQIQEAIRQ VGEIARSRNA EGITPAARLN RSERRAEQER
RGEKRLLRDS IDNPDVLEAL AWLEEGAGDP PLELLEEEDL DMLSDDLPMV PQPSKRSAAP
PSPKKSAGHH HDSGTRTDER TPSAPDTASQ SSTSQRQRRR RRPRNS
|
|---|
| |