| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1576 |
|---|
| Symbol | |
|---|
| ID | 5208531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1926344 |
|---|
| End bp | 1928863 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640595182 |
|---|
| Product | Beta-mannosidase |
|---|
| Protein accession | YP_001275918 |
|---|
| Protein GI | 148655713 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.177969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCGGA GGACATTGAT GCGGCAGATC ATGCTTTCCA GTGGCTGGCA ACTCAAGCAG
CGCGATCCAT CACGCGACCT CGCCACGCAG ATCGATGAAG ATGACGGATG GATACCGGCG
ACTGTCCCTG GCGTCGTGCA TCACGATCTG ATCGCTGCCG GTTTGCTGCC CGATCCCTTC
GAGGGGCTGA ATGAACGTGC GGCGCAGTGG GTCGGCGAGG TTGACTGGTT GTACCGCTGC
GATGTTGAGA TCGCCAATGA TCTCGCACCC GATGAAACGG CGACGCTCTG CTTCGATGGT
CTCGATACCT TCGCAAAGGT CTGGTTCGAC GATGTGATGG TGTTGTCCAG CGATAATATG
TTCATACCAC GCCGCATCGA GGTGACGCGC CTGATCCAGA CGGGTCACAA TCGGTTGATC
GTGTTGTTCG AGTCGGCATT GCGGCGCGGG CGGGCGCGTG AAGCGGAAGG CGGCGCACTG
CCGCTCTGGA ATGGCGATAG CAGCCGCCTC TATGTGCGCA AGGCGCAGTA CCACTATGGT
TGGGATTGGG GTCCGACGCT GCTGACCGCC GGTCCCTGGC GTCCGGTTCG CCTGGAAGTG
TTCACTGCCC GGATTGCCGA CCTGCACTGC CCGATCGAGG TGACGCCTGA TCTTCGGATT
GCGACAATCC CGGTGAAGAT TGTTGTCGAA GCAGGGAGCG CGATTGCGCG CAATGCGCAG
GAACTGGCGC TCTTTTTCGC CAGTCTGATA GTGCAGGTCG ATCTCTTCGA TCCTGATGGC
GCGCCGGTCG CCTCGGTCAC CCTGCCGGTC GTCGATGGCA GGGGCAGCAC TGATCTGATC
GTCTTTGCGC CGCGCCTCTG GTGGCCCAAC GGTTATGGCG ACCAACCGCT GTATCGCCTG
GTTGTCACCC TCCAGCGCAA CAACGACATC CTCGACCGGC GTGAATTGCG CCTCGGTCTG
CGACGGTTGC GCCTGGTGCA GGATTCACTC GAAGGGGAAC CCGGCACGAC CTTCCTGTTT
GAGGTCAACA ATGTGCCGAT CTTCTGTGGC GGAGCGAACT GGATCCCTGC CGACAGTTTC
GTGACGCGCA TCACGCCGGA GCGCTATCGT GCCTGGTGCG AGCAGGCAGC CGCGGCGAAC
ATGGTCATGC TGCGCGTCTG GGGCGGCGGC ATCTATGAGC ACGATGCGTT CTACGATGCC
TGTGACGAGT TGGGGTTGCT GGTGTGGCAG GATTTCATGT TCGCCTGTGG CATCTATCCC
GCTCCTGGCT GGTTCCGCGA TAGTGTGCGC GCCGAAGCCG AAGCGCAGGT GCGTCGCCTG
CGGCATCATC CGTGTCTGGC GCTCTGGTGC GGGAATAACG AAGATTATCA GATCGGCGCC
GCTACCGGTC GCTATGATCC CAACCTCACC CCTGAAGAGA ATGCTGACCG CTTCCCGGCG
CGGGTGCTCT ACGAGCGACT GCTGCCCGCT ATCTGCGCCG ATCTCGATCC AACCCGCCCC
TACTGGCCCG GAAGTCCGTA TGGCGGCGCG GATGGCAGCG ATCAAACCTT TGGCGACCGG
CATACCTGGG AGATCTGGCA CGGACCGGTT GCGCCGTATC AGGCATATGC AGCCTACCAC
GGGCGTTTTG TCAGCGAATT CGGGATGCAG GCGTTTCCTG ATCGCGCCAC CATCGAAGCA
TTTGCGCCGC CAGCAGAACG CTACCCGCAG AGCCGCACGC TCGATCATCA CAATAAAGCC
GCCGATGGTC CACGGCGCCT GGCGGTGTAC CTGAACGATA ATGTCCGCAT CCCGCCCGAC
CTGGACGGGT ATATCTATGC GACGCAACTG GTGCAGGCGG AGGCGCTGAC AACGGCAATC
CGCGCCTGGC GACGGCGGTG GGGCGGACCG GGACGCTACG CCACGGCGGG TGCGCTGGTC
TGGCAACTCA ACGATTGCTG GCCCGTCATC AGCTGGTCGA TGATCGATTA CTACCTGCGC
CCCAAACCAG CGCTCTACGC TGTGCGGCGG GCGCTCGCGC CGATCGCTCC CGGTCTGTCG
CGCACTGCCG ATAGCGTTGA ACTGTGGGTG GTGAATGGAA CCGTAGCAGC AGCGGAAGTC
GAGGTTGAAC TGCGTACCTG GACCCTCGGC GGTGATCTGG TGGCGCTCGA AAAATTGAGC
GTCTCACTTC CACCCAATCG CACAACCGAA TTGGGGCAGT TCGGCTTCGA TCCCGGATCA
GCGCTCATTT TCGATGCACG CCTGATCGTG AATGACAGGA TCGTGGCGCG CGCTTCGCTC
TGGCCCGAAC CGTTCAAGTA TCTGACCCTC CCCGATCCGG TGATCGTGCT CGACCTGGCG
CCCGGCGATT ATCTGCACAT ACGCGCCGCG CGTCCTGCGA AAGGGGTCGT GCTCTCTGCT
GGCGATGGCG TCGCCTGGAG CGATAACTAT CTCGATCTGA TGCCCGGCGA TGAACAGGTC
ATCCACGCAG AGGGTCTCGG CGAACGACCG GTCAGCGTGC GCTGGCTGGG GATGATGTGA
|
|---|
| Protein sequence | MYRRTLMRQI MLSSGWQLKQ RDPSRDLATQ IDEDDGWIPA TVPGVVHHDL IAAGLLPDPF
EGLNERAAQW VGEVDWLYRC DVEIANDLAP DETATLCFDG LDTFAKVWFD DVMVLSSDNM
FIPRRIEVTR LIQTGHNRLI VLFESALRRG RAREAEGGAL PLWNGDSSRL YVRKAQYHYG
WDWGPTLLTA GPWRPVRLEV FTARIADLHC PIEVTPDLRI ATIPVKIVVE AGSAIARNAQ
ELALFFASLI VQVDLFDPDG APVASVTLPV VDGRGSTDLI VFAPRLWWPN GYGDQPLYRL
VVTLQRNNDI LDRRELRLGL RRLRLVQDSL EGEPGTTFLF EVNNVPIFCG GANWIPADSF
VTRITPERYR AWCEQAAAAN MVMLRVWGGG IYEHDAFYDA CDELGLLVWQ DFMFACGIYP
APGWFRDSVR AEAEAQVRRL RHHPCLALWC GNNEDYQIGA ATGRYDPNLT PEENADRFPA
RVLYERLLPA ICADLDPTRP YWPGSPYGGA DGSDQTFGDR HTWEIWHGPV APYQAYAAYH
GRFVSEFGMQ AFPDRATIEA FAPPAERYPQ SRTLDHHNKA ADGPRRLAVY LNDNVRIPPD
LDGYIYATQL VQAEALTTAI RAWRRRWGGP GRYATAGALV WQLNDCWPVI SWSMIDYYLR
PKPALYAVRR ALAPIAPGLS RTADSVELWV VNGTVAAAEV EVELRTWTLG GDLVALEKLS
VSLPPNRTTE LGQFGFDPGS ALIFDARLIV NDRIVARASL WPEPFKYLTL PDPVIVLDLA
PGDYLHIRAA RPAKGVVLSA GDGVAWSDNY LDLMPGDEQV IHAEGLGERP VSVRWLGMM
|
|---|
| |