| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1575 |
|---|
| Symbol | |
|---|
| ID | 5208530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1924794 |
|---|
| End bp | 1926332 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640595181 |
|---|
| Product | 4-alpha-glucanotransferase |
|---|
| Protein accession | YP_001275917 |
|---|
| Protein GI | 148655712 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1640] 4-alpha-glucanotransferase |
|---|
| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.737195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC AACGAGCCAG CGGTATTCTG CTCCATCCAA CGTCGCTTCC GTCGCGGTGG
GGTATCGGCG ACCTGGGTGA TGGAGCATAC GACTTTGCCG ATCTGCTTGC CGCCGCAGGT
CAACGTATCT GGCAGGTGAT GCCGCTGGGT CCGACCGGCT ACGGCGACTC GCCGTACCAG
AGTTTCTCTG CGTTTGCCGG CAATCCCCTG CTGATCAACT TCGACATCCT GCTCGAAGAG
ATGTTGCTCA CGCCGTCGGA CCTGGCTGAC GCGCCGATTC TGCCGGATAC ATCGGTGAAT
TATGGCGCAG TCATTCCGTT CAAGAACCAG ATTCTGCGCC GCGCATTCGC GCGCTTCCGC
GAAGGATACG CCGACCATCT GCGCGCCGAT TTCGAGGCGT TCTGTGAAGC CCAGGCATCC
TGGCTCGACG ACTACGCCCT CTTTGCCGCA TTGAAGAGCG CCAACGGCGG CGGTCCGTGG
TCCGACTGGG AACCAGACCT GCGCAGACGC GACCCGGCGG CGCTCGCTGC CGCGCGTCGT
GCGTATGCCG ACGAAATCGC CTATCAGCGT TTCATCCAGT ACCTCTTTTT CGACCAGTGG
CTTGCGCTGA AGAAGTATGT CAACGATCTG GGGATCCAGA TCATGGGAGA CATTCCGATC
TTCGTCGCCT ACGACAGCGC CGATGTCTGG GCGCATCCTG AGTTGTTCTT CCTCGACGAT
GAGGGGCGAC CGACGGTTGT AGCCGGCGTA CCGCCGGATT ACTTCAGCGC AACCGGGCAG
TTGTGGGGGA ATCCGTTGTA TCGCTGGGAC GTACTGAAAG AACGCGGCTA CGACTGGTGG
ATCGAACGGT TCCGCACCAC GCTCACGATG GTCGATATTG TGCGTCTCGA TCATTTCCGT
GGCTTTGCTG CCTACTGGGA AGTGCCTGCC GATGAGGAGA CGGCAGTCAA TGGTCGCTGG
GCGCCAGGAC CCGGCGCCGA CTTCTTCGAG GCGGTCAAAC GGGCGCTTGG CACGTTGCCG
ATTGTGGCGG AAGACCTGGG AGTCATTACG CCTGACGTCG AAGCGCTGCG CGATCAGTTC
GGCTTTCCCG GCATGCGCGT GTTACAGTTT GCCTTTGGCG GCAAAGCCGA TCAACCCTAC
CTGCCGCACA ACCACATTCA ACGCTGCGTG GTCTACACCG GCACACACGA TAATGACACG
ACGCTTGGTT GGTGGCGCAC TGCTTCGGAT CAGGAGCGCC GCCATGTTCA GCTCTACCTG
GGGCGCAGCG GCGAAGATAT TGCGTGGGAT TTCATCCGCG CTGCGCTGTC GTCGGTGGCA
GACACCGCCA TTATCCCCCT GCAGGATGTC CTGTCGCTGG GAAGCGAGGC GCGGATGAAC
ACACCCGGAC GACCGGGCGG AAACTGGACG TGGCGCTTCG GATTGCACCA GTTGACACCG
GCGGTCATCT CGCGTCTGCG TGAACTCACC ATCCTCTACG GGCGGTACGT CGAGCCGGAA
CCGAAGCAAA AAAGCGAGGA GGATGTTGTC GAACATTGA
|
|---|
| Protein sequence | MNRQRASGIL LHPTSLPSRW GIGDLGDGAY DFADLLAAAG QRIWQVMPLG PTGYGDSPYQ
SFSAFAGNPL LINFDILLEE MLLTPSDLAD APILPDTSVN YGAVIPFKNQ ILRRAFARFR
EGYADHLRAD FEAFCEAQAS WLDDYALFAA LKSANGGGPW SDWEPDLRRR DPAALAAARR
AYADEIAYQR FIQYLFFDQW LALKKYVNDL GIQIMGDIPI FVAYDSADVW AHPELFFLDD
EGRPTVVAGV PPDYFSATGQ LWGNPLYRWD VLKERGYDWW IERFRTTLTM VDIVRLDHFR
GFAAYWEVPA DEETAVNGRW APGPGADFFE AVKRALGTLP IVAEDLGVIT PDVEALRDQF
GFPGMRVLQF AFGGKADQPY LPHNHIQRCV VYTGTHDNDT TLGWWRTASD QERRHVQLYL
GRSGEDIAWD FIRAALSSVA DTAIIPLQDV LSLGSEARMN TPGRPGGNWT WRFGLHQLTP
AVISRLRELT ILYGRYVEPE PKQKSEEDVV EH
|
|---|
| |