| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1471 |
|---|
| Symbol | |
|---|
| ID | 5208426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1791594 |
|---|
| End bp | 1792166 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640595081 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001275817 |
|---|
| Protein GI | 148655612 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000133791 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.688879 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGAGC AGTCCGACGA ATACGCGCTG ATCAAACGCT CCATCGATGG TGATCACGAC
GCTTTTGCGC AACTGATGGG GCGCTATGCC GGATCAGTGT TCAATCTGGC GTATCGAATG
CTCGGAAACG CTCAAGAGGC AGAAGATGCC AGTCAGGAGA TCTTTCTGCG GGCGTACACC
AATCTGGCGC GTTTCGACCA GGAACGCAGG TTTTCGACCT GGCTTCTGTC GATCGGGTCA
AACTATTGTA TCGACCGTCT GCGGCGGCGG CGATTTGCCT GGTTGACGCT CGACGATGTG
GTGCTGAGCG TCCCGACGTC GGCGAAAGGC CCGGAACGCA GCGCTGTTGA GCGGGAAGAA
CGCGACGCTG TACAGCGTGC ACTCCTGAGC CTGCCGCCGA CGTACCGTGA AGTTGCTGTG
CTGCGTTACT GGAACGATCT CTCGTATGAA GAGATTACGC AAGTGACCGG TTTACCGGAG
AGCACGATCA AAACCCGATT GCACCGCGCA CGGCGTATGC TCGCCGAGGC ATTGCGTGCT
GAGGGTGTTG TCCATGAAGA AATACCCTCC TGA
|
|---|
| Protein sequence | MVEQSDEYAL IKRSIDGDHD AFAQLMGRYA GSVFNLAYRM LGNAQEAEDA SQEIFLRAYT
NLARFDQERR FSTWLLSIGS NYCIDRLRRR RFAWLTLDDV VLSVPTSAKG PERSAVEREE
RDAVQRALLS LPPTYREVAV LRYWNDLSYE EITQVTGLPE STIKTRLHRA RRMLAEALRA
EGVVHEEIPS
|
|---|
| |